Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H04
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26345| Best HMM Match : DUF1531 (HMM E-Value=2.4)                   66   2e-11
SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   4e-08
SB_18905| Best HMM Match : Nop (HMM E-Value=0)                         36   0.029
SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_35649| Best HMM Match : M (HMM E-Value=6e-09)                       30   1.4  
SB_23910| Best HMM Match : HRDC (HMM E-Value=7.2e-13)                  29   2.5  
SB_16885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_5584| Best HMM Match : p450 (HMM E-Value=1)                         28   4.4  
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)                    28   5.8  
SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_26345| Best HMM Match : DUF1531 (HMM E-Value=2.4)
          Length = 169

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/46 (65%), Positives = 35/46 (76%)
 Frame = +3

Query: 123 SSVFGEKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDELQQAVDEE 260
           +SVFG KL +QVEDRLKFYETG+ PKKNI+ MKEA+D   Q    E
Sbjct: 4   TSVFGTKLHEQVEDRLKFYETGEAPKKNIDAMKEAIDIFSQEKSNE 49


>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 28/73 (38%), Positives = 43/73 (58%)
 Frame = +3

Query: 9   YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETG 188
           YH++ +G++  K+KG+ISR LA K S+A R+D   E   +  G + R  +E RLK  E G
Sbjct: 253 YHASLVGQSAPKHKGKISRMLAAKASLAIRVDALGEDVGTDMGIEARANLEARLKMIEDG 312

Query: 189 DIPKKNIEVMKEA 227
            + K +    K+A
Sbjct: 313 QMRKISGSGKKQA 325


>SB_18905| Best HMM Match : Nop (HMM E-Value=0)
          Length = 194

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 13/55 (23%), Positives = 31/55 (56%)
 Frame = +3

Query: 9   YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLK 173
           Y S  +       + + +R +A KC++A+R+D F E      G++L+++++ + +
Sbjct: 111 YFSPIVQNMPQDMRKKAARIVAAKCTLAARVDSFHESTEGTIGKRLQEEIDKKFE 165


>SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 257 LVHGLLELVHCLLHNFYILLWNVTSLIEFKTIFHLLTEFFTEH 129
           + H +L  V C L    +   NV S+IE + +++L T F  EH
Sbjct: 31  MFHAMLMNVQCTLTIQRLAQMNVISVIEQQKVYYLKTPFVNEH 73


>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
          Length = 1279

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 138  EKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDELQQAVDE 257
            E LR Q+E   KFY      ++ ++  +E +D L   V E
Sbjct: 882  ESLRSQIESLNKFYNENQSAEEKLQGQREVLDSLNAKVKE 921


>SB_23910| Best HMM Match : HRDC (HMM E-Value=7.2e-13)
          Length = 115

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 42  KNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQV 158
           KN   +++Y  +  +  +RID  SE QS  FGE++  +V
Sbjct: 44  KNLRDVAKYRPDSIANLARIDGISERQSERFGERILHEV 82


>SB_16885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = +3

Query: 138 EKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDELQQAVDEEASA 269
           +KLR++ E  L+ Y+  DI K+N++ +  + + +QQ +DE  +A
Sbjct: 393 DKLRKR-EAFLENYKKEDIFKENLDELDNSREVVQQLIDEYQAA 435


>SB_5584| Best HMM Match : p450 (HMM E-Value=1)
          Length = 286

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 124 DWTSEKQSILDAIEHLLARYLLILPLFFRP 35
           +W  E QSI+ A+++LLA ++ I   FF P
Sbjct: 179 EWAVESQSIITAVQNLLAGFIKI---FFMP 205


>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
          Length = 1243

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 113 RETVNPGCDRAFISQVPANPPL-VLQTGSTDKRRMV 9
           RET +PG  R  +S+ P  PP  +LQ  ST  +  V
Sbjct: 647 RETPSPGAGRQLVSRGPPAPPAQLLQRDSTPMQSAV 682


>SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 42   KNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQV 158
            KN   +++Y  +  +  +RID  SE +S  FGE++  +V
Sbjct: 918  KNLRDVAKYRPDSIANLARIDGISERRSERFGERILHEV 956


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,394,984
Number of Sequences: 59808
Number of extensions: 169947
Number of successful extensions: 435
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)