Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H04
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...   120   5e-28
AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...    43   1e-04
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    30   0.96 
AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical ...    27   6.8  

>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score =  120 bits (290), Expect = 5e-28
 Identities = 52/73 (71%), Positives = 65/73 (89%)
 Frame = +3

Query: 9   YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETG 188
           +HS+FIG+AG KNKGR+SRYLANKCSIA+R+DCFSE   S +GE LRQQVEDRL+++ +G
Sbjct: 358 FHSSFIGKAGTKNKGRVSRYLANKCSIAARVDCFSETPVSTYGEFLRQQVEDRLEYFTSG 417

Query: 189 DIPKKNIEVMKEA 227
            +PKKNI+VMKEA
Sbjct: 418 TVPKKNIDVMKEA 430


>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
 Frame = +3

Query: 9   YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFS-EVQSSVFGEKLRQQVEDRLKFYET 185
           YH+  I +A  K KG+++R LA KCS+A+RID  S E  ++  G + R  +E+ L+  E+
Sbjct: 340 YHAQLITQAPPKVKGKMARKLAAKCSLATRIDALSDESATNEIGIECRAALENVLR-TES 398

Query: 186 GDIPKKN 206
              P KN
Sbjct: 399 ERGPSKN 405


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 159 EDRLKFYETGDIPKKNIEVMKEAMDELQQAVDEEA 263
           ED  +  E  D+P K   V+K+++ ++ QA++E++
Sbjct: 394 EDEEEEEEEEDVPAKKAPVLKQSLSQIAQAIEEDS 428


>AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical
           protein Y32G9A.6 protein.
          Length = 840

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 180 ETGDIPKKNIEVMKEAMDELQQAVDEEA 263
           E   IPKK +E +KE+++  Q+ VD++A
Sbjct: 497 EIPSIPKKELEALKESIENGQKFVDDDA 524


>Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical
           protein F42G10.1 protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 121 WTSEKQSILDAIEHLLARY 65
           W SEKQ ++D I+H  A Y
Sbjct: 336 WASEKQCVVDRIDHFAAAY 354


>AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical
           protein F43C11.7 protein.
          Length = 295

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 147 RQQVEDRLKFYETGDIPKKNIEVMKEAMDELQQAVDEEASA 269
           ++QV+D+++  E   + KKN E+ KE  DE+ +  D   S+
Sbjct: 158 KKQVDDKIQALEKAAL-KKNDELYKEKYDEITRHYDRIRSS 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,687,797
Number of Sequences: 27780
Number of extensions: 134750
Number of successful extensions: 500
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)