Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H04
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.3  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 66  YLANKCSIASRIDC 107
           YLA+KC++ +  DC
Sbjct: 161 YLASKCALTTLTDC 174


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 133  NTDDWTSEKQSILDAIEHLLARYLLI 56
            +T+D+   K  +    EH +A Y LI
Sbjct: 1605 STNDFVGPKNCLFRKPEHFVASYALI 1630


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 54  RISRY--LANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETGDIPKKNIEVMK 221
           ++ RY    +  + ASR++  S+       +  ++ +    +  E G+I  K   +MK
Sbjct: 534 KMPRYCLFGDSVNTASRMEATSQAMQIHISQSTKELLSPSYRVKERGEIEVKGKGIMK 591


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,952
Number of Sequences: 438
Number of extensions: 1553
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)