Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H04
(552 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil... 121 4e-28
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil... 120 9e-28
At5g27140.1 68418.m03239 SAR DNA-binding protein, putative stron... 54 5e-08
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron... 50 1e-06
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 49 2e-06
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 30 0.89
At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein s... 29 2.7
At5g25540.1 68418.m03039 expressed protein 27 6.3
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 27 6.3
At2g28800.1 68415.m03501 chloroplast membrane protein (ALBINO3) ... 27 6.3
>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 522
Score = 121 bits (291), Expect = 4e-28
Identities = 52/79 (65%), Positives = 69/79 (87%)
Frame = +3
Query: 9 YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETG 188
+HS+FIGRA KNKGRI+RYLANKCSIASRIDCF++ ++ FGEKLR+QVE+RL+FY+ G
Sbjct: 355 FHSSFIGRASAKNKGRIARYLANKCSIASRIDCFADGATTAFGEKLREQVEERLEFYDKG 414
Query: 189 DIPKKNIEVMKEAMDELQQ 245
P+KN++VMKE ++ L+Q
Sbjct: 415 VAPRKNVDVMKEVIENLKQ 433
>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 499
Score = 120 bits (288), Expect = 9e-28
Identities = 52/84 (61%), Positives = 70/84 (83%)
Frame = +3
Query: 9 YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETG 188
+HS+FIGRA KNKGRI+R+LANKCSIASRIDCFS+ ++ FGEKLR+QVE+RL FY+ G
Sbjct: 355 FHSSFIGRASAKNKGRIARFLANKCSIASRIDCFSDNSTTAFGEKLREQVEERLDFYDKG 414
Query: 189 DIPKKNIEVMKEAMDELQQAVDEE 260
P+KN++VMKE ++ L++ + E
Sbjct: 415 VAPRKNVDVMKEVLENLEKKDEGE 438
>At5g27140.1 68418.m03239 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 445
Score = 54.4 bits (125), Expect = 5e-08
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +3
Query: 9 YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETG 188
YH+ + +A +NKG+I+R LA K ++A R D F Q + G + R ++E RL+ E G
Sbjct: 310 YHAPLVRQAAPENKGKIARSLAAKSALAIRCDAFGNGQDNTMGVESRLKLEARLRNLEGG 369
Query: 189 DIPKKNIEVMKEAMDELQQAVDEE 260
D+ E D ++A DEE
Sbjct: 370 DLGACEEEEEVNDKDTKKEADDEE 393
>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +3
Query: 9 YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETG 188
+H++ +G+A KNKG+ISR LA K +A R D + Q + G + R ++E RL+ E
Sbjct: 340 FHASVVGQAAPKNKGKISRSLAAKSVLAIRCDALGDSQDNTMGVENRLKLEARLRTLEGK 399
Query: 189 DI 194
D+
Sbjct: 400 DL 401
>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/62 (37%), Positives = 39/62 (62%)
Frame = +3
Query: 9 YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETG 188
+H++ +G+A K+KG+ISR LA K +A R+D + Q + G + R ++E RL+ E
Sbjct: 341 FHASLVGQAAPKHKGKISRSLAAKTVLAIRVDALGDSQDNTMGLENRAKLEARLRNLEGK 400
Query: 189 DI 194
D+
Sbjct: 401 DL 402
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 30.3 bits (65), Expect = 0.89
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = +3
Query: 39 LKNKGRISRYL--ANKCSIASRIDCFSEVQ-SSVFGEKLRQQVEDRLKFYETGDIPKKNI 209
LK K +S +L AN+ A R + S V+ + + GE+ + + + YE + KKN
Sbjct: 253 LKPKHPVSAFLVYANERRAALREENKSVVEVAKITGEEWKNLSDKKKAPYEK--VAKKNK 310
Query: 210 EVMKEAMDELQQAVDEEA 263
E +AM+E ++ +EEA
Sbjct: 311 ETYLQAMEEYKRTKEEEA 328
>At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein
similar to GI:5579331 from [Homo sapiens]; contains Pfam
profile PF01532: Glycosyl hydrolase family 47
Length = 624
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 193 MSPVS*NLRRSSTC*RSFSPNTDDWTSEKQSILDAIEHLLARY 65
+SP LR SST + S + W + +QS+ +A +H + Y
Sbjct: 101 LSPDEGQLRGSSTNGSTISNSDPKWAARQQSVKEAFDHAWSGY 143
>At5g25540.1 68418.m03039 expressed protein
Length = 175
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +3
Query: 36 GLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETGDIPKKNIEV 215
GL + YLAN C + + I+ ++++ ++ + + + D L + GD+P+ E
Sbjct: 97 GLSQESINDVYLANTCDLDATIEMLNQLE--IYSTEAEEYLPDTL---DIGDVPEIITES 151
Query: 216 MKEAMD 233
K+ D
Sbjct: 152 SKQKND 157
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 72 ANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDELQQAV 251
A + S+ + S+ S+ E R+ + +T +KN E M +++L+++V
Sbjct: 287 AREASMGGEVKALSDKVDSLSNEVTRE-LSKLTNMEDTLQGEEKNAEKMVHNIEDLKKSV 345
Query: 252 DEEASA 269
+E ASA
Sbjct: 346 EERASA 351
>At2g28800.1 68415.m03501 chloroplast membrane protein (ALBINO3)
Oxa1p homolog {PMID:11148275}; identical to chloroplast
membrane protein ALBINO3 [Arabidopsis thaliana]
GI:2209332
Length = 462
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 135 GEKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDELQQAVDEE 260
GE+ RQ E + + + K +E+++E+ E ++ D+E
Sbjct: 386 GERFRQLKEQEKRSKKNKAVAKDTVELVEESQSESEEGSDDE 427
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,027,289
Number of Sequences: 28952
Number of extensions: 121476
Number of successful extensions: 369
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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