Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H03
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo...   122   2e-29
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    34   0.009
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   2.4  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   3.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   3.2  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   4.3  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   5.6  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   7.4  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   7.4  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    25   7.4  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   9.8  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    24   9.8  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    24   9.8  

>SPBC23G7.05 |sui1|psu1|translation initiation factor
           eIF1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score =  122 bits (295), Expect = 2e-29
 Identities = 61/102 (59%), Positives = 78/102 (76%), Gaps = 2/102 (1%)
 Frame = +3

Query: 150 SIQNLNTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 326
           +IQN NT DPFAD   + +DD Q    +H+RIQQRNGRKTLTTVQGL  E+D K+I+RA 
Sbjct: 3   AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRAL 59

Query: 327 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTRS-GLVK 449
           KK+FACNGT+V+  + GEV+QLQGDQR  + ++LT+  GL K
Sbjct: 60  KKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQK 101


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 34.3 bits (75), Expect = 0.009
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 228 VHVRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQ 404
           V ++  +R  RK +TTVQGL +   + KK  +    +FA   +V +  +  + + +QGD 
Sbjct: 99  VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDL 158

Query: 405 RENICQWLTRSGLVKPE 455
             +I  ++       PE
Sbjct: 159 NYDIFDFILEKFKEVPE 175


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 375 RTPGAPQRYRCTRTPSCMPARSSS---SHIPRTSPAPWSMFY 259
           R+   P +Y+C    SC  AR+SS   + +P  S   WS+F+
Sbjct: 409 RSRSCPSKYQCY---SCRCARNSSLEFTSLPGQSSDTWSIFW 447


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 342 TRTPSCMPAR-SSSSHIPRTSPAP 274
           +R+PS  P    S+ HIPR SP+P
Sbjct: 385 SRSPSVDPNTVKSAQHIPRMSPSP 408


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 412 FSRWSPCSCSTSPYSGCSTTVPLHANSFLHARTIFFKSYSED 287
           FSR   C    +  S  S+T P +  + +   + F ++YSED
Sbjct: 748 FSRSMDCDSIKNALSVVSSTRPKNTTAVIDVDSSFCRNYSED 789


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 387 AAPRRTPGAPQRYRCTRTPSCMPARSSSSHIPRTS 283
           A+PR TP  P  +   +  S +P +  SS  P T+
Sbjct: 33  ASPRLTPNLPPPFSVHQLQSFVPPQPPSSSSPSTT 67


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 358 WSTRSTARCCNCKATSARTFV 420
           +ST   ARCC C     R FV
Sbjct: 232 YSTLFAARCCGCDGPILRQFV 252


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 191 SIGEWVECVQILDGHTIERRCSLF 120
           SI EWVE  Q LD     R CS++
Sbjct: 102 SIREWVEIPQHLDYSFSVRLCSIY 125


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +3

Query: 270 TTVQGLSSEYDL----KKIVRACKKEFACN 347
           +T+ GL++ Y +     K V+AC K F CN
Sbjct: 122 STLSGLAASYVILGLQSKNVQACIKHFVCN 151


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 93  SALYRSVSLKQRASTFNRMSIQNLNTFDPF 182
           +++Y S+    ++ST+N   I + NT+  F
Sbjct: 533 NSVYGSIKKDAQSSTYNATDIMSSNTYQEF 562


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 149  VHPESEHIRPIRRCYQKL 202
            +HP    +  +RRC+Q+L
Sbjct: 1969 IHPLKRKVAQVRRCFQEL 1986


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 209 VLRAFDSIGEWVECVQILDGHTIERRCSLFQ 117
           +LR   S+  W+  ++  +G T+E+R  LF+
Sbjct: 25  LLRDPYSLKSWLRYIKTHEGSTLEKRVLLFE 55


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 378 EVLQLQGDQRENICQWLTRSGL 443
           E L L+ D++  + QW  RSGL
Sbjct: 11  EYLPLKNDRKAYLNQWAKRSGL 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,117
Number of Sequences: 5004
Number of extensions: 38343
Number of successful extensions: 131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)