Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H03
         (461 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)             127   5e-30
SB_23958| Best HMM Match : FG-GAP (HMM E-Value=0.055)                  35   0.028
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)          29   1.9  
SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28)              28   3.3  
SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)                      28   3.3  
SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)                 28   4.3  
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.7  
SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_30239| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 27   7.6  
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)                27   7.6  
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)                 27   10.0 
SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07)                27   10.0 
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_54445| Best HMM Match : CMV_US (HMM E-Value=3.9)                    27   10.0 
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   10.0 

>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score =  127 bits (306), Expect = 5e-30
 Identities = 60/98 (61%), Positives = 75/98 (76%), Gaps = 3/98 (3%)
 Frame = +3

Query: 177 PFADAIKS---SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 347
           PF DA K    S   VQ  ++HVRIQQRNGRKTLTT+QG+S EYD KK+V+A KK+FACN
Sbjct: 482 PFEDASKGDGESNTSVQRDVIHVRIQQRNGRKTLTTIQGISDEYDKKKLVKAFKKQFACN 541

Query: 348 GTVVEHPEYGEVLQLQGDQRENICQWLTRSGLVKPEQL 461
           GTVV+HPEYGE +QLQGDQR +  ++L +  L K +Q+
Sbjct: 542 GTVVDHPEYGECIQLQGDQRAHAQEFLLQIDLAKKDQI 579


>SB_23958| Best HMM Match : FG-GAP (HMM E-Value=0.055)
          Length = 683

 Score = 35.1 bits (77), Expect = 0.028
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 315 RSSSSHIPRTSPAPWSMFYARSAAGFGRALDHLARRPPSF 196
           R ++S  P TS APW  F+     GF R LD+L    P F
Sbjct: 320 RHATSSGPITSGAPWGSFHPDPKTGFIRILDNLVMTEPKF 359


>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
          Length = 724

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -3

Query: 414 CSRAGRLAVAAPRRTPGAPQRYRCTRTPSCMPA-RSSSSHIPRTSPAPWSM 265
           CS+ G        R P        T  PSC P       H+PR SP P+S+
Sbjct: 423 CSKQGADEYCRFVREPSLSLLELLTAFPSCFPPFERLLEHLPRLSPRPYSI 473


>SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28)
          Length = 856

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -2

Query: 403 WSPCSCSTSPYSGCSTTVPLHANSFLHARTIFFKSYSEDK 284
           W P  C    YS C  T+ +     LH   I     SED+
Sbjct: 802 WRPFHCDDKFYSICKLTLRIERRQKLHYSNILLTVQSEDE 841


>SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)
          Length = 425

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/80 (25%), Positives = 33/80 (41%)
 Frame = -3

Query: 438 PI**ATDKCSRAGRLAVAAPRRTPGAPQRYRCTRTPSCMPARSSSSHIPRTSPAPWSMFY 259
           P+  A    S  G+   +  ++ PG    YRC  TP   P R S+  + R   +  ++  
Sbjct: 186 PVISAATSGSTIGKNISSPVKKPPGFISMYRCILTPPGSPKRLSAVLVARKRSSNRTVAS 245

Query: 258 ARSAAGFGRALDHLARRPPS 199
           ++ A     +     R PPS
Sbjct: 246 SKQARQHISSHSSPGRTPPS 265


>SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)
          Length = 314

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 336 TPSCMPARSSSSHIPRTSPAP 274
           +P  MP R+SS  +PR SP P
Sbjct: 43  SPQPMPGRNSSPIVPRASPQP 63


>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 387 AAPRRTPGAPQRYRCTRTPSCMPARSSSSHIPRTSPAPWS 268
           A+P ++  +P  ++  ++P   P RS S+  P + P P S
Sbjct: 411 ASPPQSVKSPIHFQANKSPPFHPQRSPSASKPSSRPPPLS 450


>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 216 QDGLVHVRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNG 350
           QDGLV  R+ Q NGR   T +  L    YD +++    K+     G
Sbjct: 760 QDGLVSYRVSQGNGRSDGTGLGDLRDVGYDGRRLAYGTKRGVLSGG 805


>SB_30239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 396 LAVAAPRRTPGAPQRYRCTRTPSCMPARSSSSHIPRTSPAP 274
           +A+  PRR  G  Q     +TPS  PA S+   I  ++ AP
Sbjct: 355 IAMTVPRRHSGTYQFDLFPKTPSNKPAMSAEQWIMGSNKAP 395


>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 683

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 172 STHSPMLSKARRTTCKMV*CTSESSSGT 255
           ++H PM S++++T C    CT+E +  T
Sbjct: 565 TSHDPMTSQSKKTACGDNGCTTEETMDT 592


>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
          Length = 617

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -3

Query: 405 AGRLAVAAPRRTPGAPQR----YRCTRTPSCMPARSSSSHIPRTSPAP 274
           A + A  A  +T G P +    ++C+      PA   ++  P TSPAP
Sbjct: 403 AAKTASPAAAKTSGPPAKSASNHKCSPAKPSTPASKDAAAKPPTSPAP 450


>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 172 STHSPMLSKARRTTCKMV*CTSESSSGT 255
           ++H PM S++++T C    CT+E +  T
Sbjct: 202 TSHDPMTSQSKKTACGDNGCTTEETMDT 229


>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 307 RRSCGHARRSSRATVPLWSTRSTARCCNCKATSAR 411
           RRS GH R SS+ +  L ++R +A  C+  +T  +
Sbjct: 268 RRSNGHKRHSSKESRSLDTSRDSAVICSESSTPTK 302


>SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
          Length = 421

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +2

Query: 68  LSVTVILLKCVVSQRFIETKSIYVQSYVHPESEHIRPIR 184
           +S+T+++L  V+    +   S+ V  Y+H   +   P++
Sbjct: 210 ISITILVLNYVIPVMILTVMSVRVLKYLHRRRQQAHPLQ 248


>SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07)
          Length = 582

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 267 LTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWL 428
           L  +Q + S  D K +VR    +  C+  VV     G  + L GD +++I  WL
Sbjct: 65  LRFLQKVCSGVD-KSLVRGIGFDATCSLAVVGQDGRGLSVSLSGDPQKDIIMWL 117


>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 327 KKEFACNGTVVEHPEYGEVLQLQ 395
           KK    NGTV+  P YGE+ +++
Sbjct: 547 KKHIGLNGTVISLPIYGEMKEIR 569


>SB_54445| Best HMM Match : CMV_US (HMM E-Value=3.9)
          Length = 460

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 417 KCSRAGRLAVAAPRRTPGAPQRYRCTRTPS 328
           KC+ A  +   +P+R P A + Y  T  PS
Sbjct: 426 KCTIASSVHAKSPQRRPNASKNYMATVAPS 455


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 3/20 (15%)
 Frame = -2

Query: 412  FSRWSPC---SCSTSPYSGC 362
            F R++PC   +CS+ PYS C
Sbjct: 1343 FGRYNPCEGFNCSSPPYSSC 1362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,669,777
Number of Sequences: 59808
Number of extensions: 330191
Number of successful extensions: 1046
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)