Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H03
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   2.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   2.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   6.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   6.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.5  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
 Frame = -3

Query: 333 PSCMPARSSS-----SHIPRTSPAPWS 268
           P C P  +       SHI RT P  WS
Sbjct: 81  PQCSPEETRQIKKVLSHIQRTYPKEWS 107


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
 Frame = -3

Query: 333 PSCMPARSSS-----SHIPRTSPAPWS 268
           P C P  +       SHI RT P  WS
Sbjct: 81  PQCSPEETRQIKKVLSHIQRTYPKEWS 107


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 144 RMSIQNLNTFDPFADAIKSSE 206
           RM  +N+N FDP+       E
Sbjct: 225 RMVDENINGFDPYVKTPNDEE 245


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 294 PRTSPAPWSMFYARSAAGFGRALD 223
           P   P  W +  A   AGFG + D
Sbjct: 218 PYQPPFAWKILKAAEEAGFGVSED 241


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 382 TSPYSGCSTTVPLH 341
           TS YSG  T +P H
Sbjct: 369 TSTYSGSPTELPKH 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,933
Number of Sequences: 438
Number of extensions: 2951
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)