Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H03
(461 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54290.1 68414.m06189 eukaryotic translation initiation facto... 120 6e-28
At4g27130.1 68417.m03899 eukaryotic translation initiation facto... 118 3e-27
At5g54760.1 68418.m06820 eukaryotic translation initiation facto... 117 3e-27
At5g54940.2 68418.m06843 eukaryotic translation initiation facto... 113 7e-26
At5g54940.1 68418.m06842 eukaryotic translation initiation facto... 113 7e-26
At5g11900.1 68418.m01392 eukaryotic translation initiation facto... 35 0.031
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera... 35 0.031
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 32 0.16
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 31 0.38
At2g15345.1 68415.m01755 expressed protein 30 0.88
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 28 2.7
At1g63430.1 68414.m07173 leucine-rich repeat transmembrane prote... 28 2.7
At1g63470.1 68414.m07177 DNA-binding family protein contains a A... 28 3.5
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 27 4.7
At1g24120.1 68414.m03043 DNAJ heat shock protein, putative simil... 27 4.7
At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3, p... 27 6.2
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro... 27 6.2
At4g18640.1 68417.m02759 leucine-rich repeat transmembrane prote... 27 8.2
At3g04550.1 68416.m00483 expressed protein 27 8.2
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont... 27 8.2
At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containi... 27 8.2
>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
SUI1, putative similar to P|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 120 bits (288), Expect = 6e-28
Identities = 55/105 (52%), Positives = 72/105 (68%)
Frame = +3
Query: 147 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 326
+ +Q FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++
Sbjct: 4 LEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDL 63
Query: 327 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTRSGLVKPEQL 461
KKEF CNGTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +
Sbjct: 64 KKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNI 108
>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 118 bits (283), Expect = 3e-27
Identities = 54/97 (55%), Positives = 69/97 (71%)
Frame = +3
Query: 171 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 350
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF CNG
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71
Query: 351 TVVEHPEYGEVLQLQGDQRENICQWLTRSGLVKPEQL 461
TVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +
Sbjct: 72 TVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNI 108
>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 117 bits (282), Expect = 3e-27
Identities = 54/97 (55%), Positives = 69/97 (71%)
Frame = +3
Query: 171 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 350
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF CNG
Sbjct: 12 FDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71
Query: 351 TVVEHPEYGEVLQLQGDQRENICQWLTRSGLVKPEQL 461
TVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +
Sbjct: 72 TVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNI 108
>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 113 bits (271), Expect = 7e-26
Identities = 49/105 (46%), Positives = 76/105 (72%)
Frame = +3
Query: 147 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 326
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 327 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTRSGLVKPEQL 461
KK+F CNG VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+
Sbjct: 63 KKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQI 107
>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 113 bits (271), Expect = 7e-26
Identities = 49/105 (46%), Positives = 76/105 (72%)
Frame = +3
Query: 147 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 326
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 327 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTRSGLVKPEQL 461
KK+F CNG VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+
Sbjct: 63 KKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQI 107
>At5g11900.1 68418.m01392 eukaryotic translation initiation factor
SUI1 family protein similar to SP|O43583
Density-regulated protein (DRP1 protein) (Smooth muscle
cell associated protein-3) {Homo sapiens}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 198
Score = 34.7 bits (76), Expect = 0.031
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 249 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQW 425
RN RK +T V+GL L + K+FA +VV+ P E + +QGD +I ++
Sbjct: 114 RNKRKCITIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEF 173
Query: 426 LTRSGLVKPEQ 458
+T + PE+
Sbjct: 174 ITDTWPDVPER 184
>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 34.7 bits (76), Expect = 0.031
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +3
Query: 111 VSLKQRASTFNRMSIQNLN--TF-DPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 272
+S+ R+ N +++NL+ TF D F D + S+ DDVQ+ LVH +RNG K L+
Sbjct: 41 LSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLVHF---ERNGDKALS 94
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 32.3 bits (70), Expect = 0.16
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +1
Query: 277 CRACPRNM--T*RRSCGHARRSSRATVPLWSTRSTARCCNCKATSARTFVSGSL 432
C C N+ SCGH S V L RCC CK S FV+ +L
Sbjct: 5 CAVCADNLEWVAYGSCGHREVCSTCVVRLRFVLDDPRCCICKTESPIVFVTKAL 58
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 31.1 bits (67), Expect = 0.38
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +1
Query: 277 CRACPRNM--T*RRSCGHARRSSRATVPLWSTRSTARCCNCKATSARTFVSGSL 432
C C N+ SCGH S V L + RCC CK FV+ +L
Sbjct: 5 CAVCAENLEWVGYGSCGHREVCSTCVVRLRFILNDRRCCICKTECPVVFVTKAL 58
>At2g15345.1 68415.m01755 expressed protein
Length = 121
Score = 29.9 bits (64), Expect = 0.88
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +3
Query: 222 GLVHVRIQQ--RNGRKTLTTVQGL--SSEYD-LKKIVRACKKEFACNGTVVE 362
GLV++ QQ R G K L ++GL + Y LKK R+C KE+ + +E
Sbjct: 3 GLVNMVYQQTERLGYKNLEMIKGLDRTENYSKLKKYYRSCVKEYELSNKAIE 54
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 128 SIYVQSYVHPESEHIRPIRRCYQ 196
+IYV+S V P +H+RPIR YQ
Sbjct: 191 NIYVRSDVKPIKDHVRPIRE-YQ 212
>At1g63430.1 68414.m07173 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profiles: PF00069
Eukaryotic protein kinase domain, PF00560 Leucine Rich
Repeat; contains 1 predicted transmembrane domain
Length = 664
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 300 DLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTR 434
++ R E+A NGT+ EH YGE + +R I + R
Sbjct: 429 EISPFTRMLVFEYASNGTLYEHLHYGEAALVSWARRMKIVIGIAR 473
>At1g63470.1 68414.m07177 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 378
Score = 27.9 bits (59), Expect = 3.5
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -3
Query: 360 PQRYRCTRTPSCMP--ARSSSSHIPRTSPAPWSMFYARSAAGFGRALDHLARRP 205
P TP P A S+ H P+ PA + S +G GR+LD +R P
Sbjct: 317 PTNSEMETTPGSAPEAAASTGQHTPQNFPAQGMSGWPVSGSGSGRSLDS-SRNP 369
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 360 PQRYRCTRTPSCMPARSSSSHIPRTSPAP 274
P++ RT SC+PAR +S PR P
Sbjct: 224 PEKRMYNRTVSCLPARPFNSGKPREQQQP 252
>At1g24120.1 68414.m03043 DNAJ heat shock protein, putative similar
to Altered Response to Gravity [Arabidopsis thaliana]
GI:4249662; contains Pfam profile PF00226 DnaJ domain
Length = 436
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 79 SYIVEVRCIAAFH*NKEHLRSI 144
SY ++V C AAF KE LRS+
Sbjct: 279 SYTIQVLCAAAFTQEKEDLRSV 300
>At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3,
putative (RPN3) similar to 26S proteasome regulatory
subunit S3 SP:P93768 [Nicotiana tabacum (Common
tobacco)]
Length = 487
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +3
Query: 117 LKQRASTFNRMSIQN------LNTFDPFADAIKSSEDDVQDGLVHVRIQQRNG 257
L+ + +++R+S+Q+ LN+ +P ADA ++DG + I +NG
Sbjct: 359 LRNISISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGAIDATIDHKNG 411
>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
profile PF01593: amine oxidase, flavin-containing
Length = 384
Score = 27.1 bits (57), Expect = 6.2
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +3
Query: 210 DVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHP 368
D + ++H N T +Q LSSE L KI KEF C+G V P
Sbjct: 269 DSERWILHSTPDYANSVIAKTGLQKLSSE-TLNKISEEMFKEFQCSGLVSSLP 320
>At4g18640.1 68417.m02759 leucine-rich repeat transmembrane protein
kinase, putative
Length = 686
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 333 EFACNGTVVEHPEYGEVLQLQGDQRENICQWLTRSGLV 446
E+A NGT+ EH V +L + E++ W R ++
Sbjct: 465 EYAPNGTLFEHLHVNNVFRLSDKETEHL-DWSARMRII 501
>At3g04550.1 68416.m00483 expressed protein
Length = 449
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 360 PQRYRCTRTPSCMPARSSSSHIPRTSPAPWSMF 262
P+ T T S +P RSS++ IP+ PA ++
Sbjct: 33 PRTVSFTVTASMIPKRSSANMIPKNPPARQQLY 65
>At1g74190.1 68414.m08592 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 965
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 325 ARRSSRATVPLWSTRSTARCCNCKATSARTFVSG 426
+R S + +P W+ +T+ CC K + VSG
Sbjct: 44 SRTESESVLPTWTNDTTSDCCRWKGVACNR-VSG 76
>At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 408
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 50 ETHRRALSVTVILLKCVVSQRFIETKSIYVQSYVHPESEHIRPIRRCYQKL 202
E R S+ +L C+V++ + E K +Y++ P+ I P Y ++
Sbjct: 146 EISRTVKSLNALLFACLVAKDYKEAKRVYIEM---PKMYGIEPDLETYNRM 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,507,461
Number of Sequences: 28952
Number of extensions: 216123
Number of successful extensions: 679
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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