Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H02
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 253 7e-68
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 252 1e-67
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 251 2e-67
01_01_1101 + 8731427-8732938 29 1.7
12_01_1046 - 10756062-10756326,10757618-10757782,10757901-107582... 29 3.0
03_02_0539 - 9329572-9330729,9330988-9331041 28 3.9
02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084... 28 3.9
10_08_0510 + 18430580-18431781,18433176-18433554 28 5.2
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 28 5.2
01_05_0674 - 24187820-24188713,24188809-24189204 28 5.2
04_04_0950 + 29609484-29611025 27 6.8
03_05_0057 + 20350971-20351405 27 6.8
02_04_0395 + 22590097-22590343,22590566-22590921 27 6.8
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 27 6.8
12_01_0337 - 2591689-2593839 27 9.0
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 9.0
01_05_0710 + 24492337-24493053 27 9.0
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 253 bits (619), Expect = 7e-68
Identities = 113/165 (68%), Positives = 134/165 (81%)
Frame = +3
Query: 24 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 203
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 204 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 383
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 384 KLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDIST 518
KLC VR V G K +P+L T+DGRT+RYPDPLI ND++++D+ T
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLET 182
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 252 bits (617), Expect = 1e-67
Identities = 111/166 (66%), Positives = 135/166 (81%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDIST 518
+KLC VR V G K +PYL T+DGRT+RYPDPLI ND++++D+ T
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLET 166
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 251 bits (615), Expect = 2e-67
Identities = 110/166 (66%), Positives = 135/166 (81%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDIST 518
+KLC VR V G K +PYL T+DGRT+RYPDP+I ND++++D+ T
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLET 166
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 206 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 72
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>12_01_1046 -
10756062-10756326,10757618-10757782,10757901-10758206,
10758279-10758377,10760555-10760670,10760756-10760848,
10760946-10761107,10761784-10762170
Length = 530
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 513 RCRAAPSRSH**AGPGTGACARRASPGTARSWGRSRRAAHCTAC 382
R RAAP + + G GA ASP A WGRS A+ C
Sbjct: 40 RARAAPRLAVSASSAGAGA----ASPSPAAGWGRSDAASSLERC 79
>03_02_0539 - 9329572-9330729,9330988-9331041
Length = 403
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 374 SQVQAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQCER 493
S A AA++ RP A AR A AP P PA +C R
Sbjct: 58 SSASAAAAAAQQARPNSMAER--ARLARAPQPEPALKCPR 95
>02_04_0415 +
22706964-22707072,22707784-22708077,22708304-22708416,
22708504-22709002,22709106-22709144,22709228-22709515,
22709766-22709905,22710468-22710960,22711082-22711356
Length = 749
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 327 YDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPD 473
+ V G T ITP EA N+ T + P +++H+G + YPD
Sbjct: 321 FSVDGVLTDFPITPSEAIGCFSNLNNSKTD-NAKPLIISHNGASGDYPD 368
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 502 CTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 380
CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 202 CTEARKIFDSMTKRGLKPD-ITTYGTLLQGYATKGALVEMH 241
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 502 CTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 380
CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 320 CTEARKMFDSMTKRGLKPE-ITTYGTLLQGYATKGALVEMH 359
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 398 AARRDRPQERAVPGDARRAHAPVPGPAHQCERLGAARH 511
AA R P A A AP P P+HQ ++ +RH
Sbjct: 149 AANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKRSRH 186
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 220 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 92
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>03_05_0057 + 20350971-20351405
Length = 144
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +2
Query: 383 QAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQCERLG 499
Q Q AAR D P R + AP PG A RLG
Sbjct: 29 QPPQAAARPDEAPHHRQPAPDRPSAAPEPGGAGGVARLG 67
>02_04_0395 + 22590097-22590343,22590566-22590921
Length = 200
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -1
Query: 429 ARSWGRSRRAAHCTACTWLLQV*YGG 352
ARSW RSRR H W L GG
Sbjct: 47 ARSWIRSRRRGHGVGEAWALAAATGG 72
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 315 FRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGP 419
+ LIYD++G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 451 PSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYI 323
P C + Y +L P+A + LH+ + S I + LP S +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLL 141
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -3
Query: 130 LWGPVEGRGAYTPPSLSNIHALGAFKR 50
L G G G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>01_05_0710 + 24492337-24493053
Length = 238
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 511 MSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWI 350
M + T +F L++ + +RPS + LLG + +RR ++ V+RW+
Sbjct: 96 MPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSRRRARE----AASVVRWL 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,756,583
Number of Sequences: 37544
Number of extensions: 345424
Number of successful extensions: 1122
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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