Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H02
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             289   7e-79
SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_57757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_6316| Best HMM Match : tRNA_int_endo (HMM E-Value=0.016)            28   4.0  
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)     28   5.3  
SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)                   27   9.3  
SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)            27   9.3  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  289 bits (710), Expect = 7e-79
 Identities = 133/166 (80%), Positives = 145/166 (87%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
           MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484

Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
           V KIVKQRLIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAK
Sbjct: 485 VKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAK 544

Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDIST 518
           YKL  VRRV  G K VPY+VTHD RT+RYPDP I VND+V +DI T
Sbjct: 545 YKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKT 590


>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 343 LPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 167
           + F   ++  NS  FS       P G+   + +FPS + +    ILS    +S ++S+F
Sbjct: 23  MSFAEVMRLVNSMDFSTVIFDTAPTGHTLRLLSFPSVIEKSLGKILSLKNSISPFISQF 81


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +3

Query: 177 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 344
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_57757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 380 VQAVQCAARRDRPQERAVPGDARRAHAPV 466
           ++   C A+  R   R VP DAR  H PV
Sbjct: 11  IKPFTCLAKGSRTANRGVPMDARHRHRPV 39


>SB_6316| Best HMM Match : tRNA_int_endo (HMM E-Value=0.016)
          Length = 280

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 310 SYSV*YMM*KEGSLSTVSHLK-KPSTSCAMCGASR 411
           SYSV   + +E SL T + ++ +P T C++CG SR
Sbjct: 207 SYSVVVQLVEEKSLDTQNVVQSRPLTWCSLCGLSR 241


>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
          Length = 832

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 229 MRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAY 98
           +R C+  LS+S   S   S+FR +   GKH  ++    +G+G +
Sbjct: 100 LRLCYNCLSSSHISSKCTSKFRCRQCGGKHHTTICERDKGQGPH 143


>SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 362 HT*RSQVQAVQCAAR---RDRPQERAVPGDARRAHAPVPGPAHQCERLGAAR 508
           +T R Q+ A  CAA    R   QE A+ G+  R       P H C+   A R
Sbjct: 203 NTHRRQITAATCAAARQPRQHAQEPAIRGNMHRHQTTT--PHHMCQTAAARR 252


>SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 299 LNGYNVHKSRRVRGVSPHFPVHFDET 222
           L+G+    +RRVR  +P FP H D T
Sbjct: 295 LSGFRTLGARRVRIATPSFPHHRDRT 320


>SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 229 MRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAY 98
           +R C+  LS+S   S   S+FR +   GKH  ++    +G+G +
Sbjct: 413 LRLCYNCLSSSHISSKCTSKFRCRQCRGKHHTTICERDKGQGPH 456


>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
          Length = 1188

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -2

Query: 293  GYNVHKSRRVRGVSPHFPVHFDETLLHNLKHLIAGERVLEPISQEDH*RQAFAQLVGTRR 114
            G N  K+   + +S    +   ++ LHNLK   A   +    SQ +  R     L  TR 
Sbjct: 843  GGNEAKTLAAQNLSASPDIRRFQSSLHNLKS--AAISLSGSRSQAEPTRNESPSLKETRH 900

Query: 113  GPRRVHAAQL 84
            GP  +HAA +
Sbjct: 901  GPEEMHAANV 910


>SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = -3

Query: 469 GYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMD 290
           GY++++   +  YG++L P+  +  +H+ Y +         NLP + +++ N   V  +D
Sbjct: 377 GYQNLKTPPLNLYGSVLDPIGFQECIHAAYRS---------NLPPSFHVEMNRQLVDHID 427


>SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)
          Length = 445

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 198 EVLKIVKQRLIKVDGKVRTDP-TYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEE 374
           + L+  K + ++V    RT P   P GF+ V  +EK      +    +  F   +  P E
Sbjct: 375 QFLRNDKWKTVEVPRATRTFPEARPPGFLSVSPMEKAASRISITQSERSAFRAPQQKPRE 434

Query: 375 AKYKL 389
           A+ +L
Sbjct: 435 AQLRL 439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,616,870
Number of Sequences: 59808
Number of extensions: 398659
Number of successful extensions: 1082
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)