BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_H02 (519 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 231 2e-61 Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr... 31 0.49 Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr... 31 0.49 M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical pr... 29 2.0 M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical pr... 29 2.0 AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical ... 29 2.0 Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical pr... 27 6.1 U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 27 6.1 U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical p... 27 6.1 AL132948-6|CAC51070.1| 395|Caenorhabditis elegans Hypothetical ... 27 6.1 AF022980-5|AAG24192.1| 328|Caenorhabditis elegans Serpentine re... 27 6.1 Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical pr... 27 8.0 U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ... 27 8.0 EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport... 27 8.0 AF077536-7|AAT81207.1| 570|Caenorhabditis elegans Hypothetical ... 27 8.0 AF000197-5|AAB52900.3| 579|Caenorhabditis elegans Hypothetical ... 27 8.0 >AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal protein, small subunitprotein 4 protein. Length = 259 Score = 231 bits (566), Expect = 2e-61 Identities = 106/164 (64%), Positives = 127/164 (77%) Frame = +3 Query: 27 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 206 RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61 Query: 207 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 386 KI+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +K Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121 Query: 387 LCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDIST 518 LC V+ V T K VP L T DGRT+RYPDP + VND++ +IST Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNIST 165 >Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical protein F11A10.4 protein. Length = 1646 Score = 31.1 bits (67), Expect = 0.49 Identities = 19/53 (35%), Positives = 29/53 (54%) Frame = -3 Query: 376 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 218 A+S +R +V+ F I+ + +FS + T +NP+G S R P TL R C Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214 >Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical protein F11A10.4 protein. Length = 1646 Score = 31.1 bits (67), Expect = 0.49 Identities = 19/53 (35%), Positives = 29/53 (54%) Frame = -3 Query: 376 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 218 A+S +R +V+ F I+ + +FS + T +NP+G S R P TL R C Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214 >M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical protein ZK370.3b protein. Length = 921 Score = 29.1 bits (62), Expect = 2.0 Identities = 9/31 (29%), Positives = 23/31 (74%) Frame = -2 Query: 245 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 153 +P H ++ ++NL ++++ ER+ EP++ +D+ Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597 >M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical protein ZK370.3a protein. Length = 927 Score = 29.1 bits (62), Expect = 2.0 Identities = 9/31 (29%), Positives = 23/31 (74%) Frame = -2 Query: 245 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 153 +P H ++ ++NL ++++ ER+ EP++ +D+ Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597 >AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical protein Y71A12B.6 protein. Length = 316 Score = 29.1 bits (62), Expect = 2.0 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -3 Query: 334 TSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMR 224 T+ N F FS T S+NP GY+ V TL + Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272 >Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical protein T11F9.10 protein. Length = 325 Score = 27.5 bits (58), Expect = 6.1 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = +1 Query: 352 STVSHLK-KPSTSCAMCGASRP 414 +TV HL +P TSCA C ++RP Sbjct: 19 TTVLHLHIRPPTSCATCTSNRP 40 >U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical protein C48B6.4 protein. Length = 623 Score = 27.5 bits (58), Expect = 6.1 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%) Frame = +3 Query: 339 GRFTIHRITPEEAKYKLCNVRRVATGPKSVP-----YLVTHDGRTLR-YP 470 G+ + R+T E Y+ C +++ A K VP Y+V H R ++ YP Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351 >U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical protein F20D6.12 protein. Length = 513 Score = 27.5 bits (58), Expect = 6.1 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Frame = -3 Query: 406 TRRTLHSLYL--ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGY 263 T R LYL I +I+ L S++K NNSF+F I+ Y Sbjct: 15 TWRLYDPLYLIFCIPATIHYIIVLKVVSHLKENNSFLFIFTILGISDIFY 64 >AL132948-6|CAC51070.1| 395|Caenorhabditis elegans Hypothetical protein Y39B6A.7 protein. Length = 395 Score = 27.5 bits (58), Expect = 6.1 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = +3 Query: 273 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRV 407 GF DV+S+ + ++L +D++ F H+I + + N+ RV Sbjct: 235 GFTDVISMIQRDKLNEKFFDMRFFFVSHQIDRVARRLEELNITRV 279 >AF022980-5|AAG24192.1| 328|Caenorhabditis elegans Serpentine receptor, class j protein45 protein. Length = 328 Score = 27.5 bits (58), Expect = 6.1 Identities = 15/60 (25%), Positives = 29/60 (48%) Frame = -3 Query: 346 NLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 167 N YI+ + F +D+T N G + SV ++ +T TI +++ +++ S F Sbjct: 156 NFELLQYIREDFQETFGLDSTEFNMVGALFSVGSYETTHRAWIATISWSAVSIASITSFF 215 >Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical protein T18D3.1 protein. Length = 523 Score = 27.1 bits (57), Expect = 8.0 Identities = 18/47 (38%), Positives = 25/47 (53%) Frame = -3 Query: 430 GTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMD 290 G +L +RR H ++ S +R+ N P TSY KR S V SM+ Sbjct: 120 GGILDVRGSRRREHHHHVVSLYDLRY-PNDPITSYFKRLKSSVTSME 165 >U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein related protein 2 protein. Length = 1272 Score = 27.1 bits (57), Expect = 8.0 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -2 Query: 299 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 204 L NVH R G+ PV FD T+ N+K Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496 >EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter PGP-2 protein. Length = 1272 Score = 27.1 bits (57), Expect = 8.0 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -2 Query: 299 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 204 L NVH R G+ PV FD T+ N+K Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496 >AF077536-7|AAT81207.1| 570|Caenorhabditis elegans Hypothetical protein C16A11.2a protein. Length = 570 Score = 27.1 bits (57), Expect = 8.0 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = -3 Query: 508 SSC-TESFTLMSGSGYRSVRPSCVTRYGTLLGPV 410 S+C + ++S SGY R SC+ Y ++G + Sbjct: 15 SNCRNDIIAMLSASGYHRARVSCLNDYDKIVGGI 48 >AF000197-5|AAB52900.3| 579|Caenorhabditis elegans Hypothetical protein T21G5.1 protein. Length = 579 Score = 27.1 bits (57), Expect = 8.0 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -1 Query: 321 NGITHLFSQWIQRP*IPPGTWGQSALSRPL 232 N + LF+Q IQ +PPGT QS+ P+ Sbjct: 516 NKLPLLFAQTIQATSLPPGTIAQSSTPIPI 545 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,462,721 Number of Sequences: 27780 Number of extensions: 264048 Number of successful extensions: 792 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 764 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 792 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1007108110 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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