Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H02
(519 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 260 3e-70
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 260 3e-70
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 260 3e-70
At4g23310.1 68417.m03359 receptor-like protein kinase, putative ... 31 0.35
At4g38440.1 68417.m05432 expressed protein 31 0.47
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont... 29 1.4
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 29 2.5
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 2.5
At1g72240.1 68414.m08352 expressed protein 29 2.5
At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:4... 29 2.5
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 28 3.3
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 28 3.3
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 28 3.3
At1g61350.1 68414.m06914 armadillo/beta-catenin repeat family pr... 27 5.7
At2g36900.1 68415.m04526 Golgi SNARE protein membrin 11 (MEMB11)... 27 7.6
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 260 bits (638), Expect = 3e-70
Identities = 118/164 (71%), Positives = 137/164 (83%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDI 512
+KLC VR + G K +PYL T+DGRT+RYPDPLI ND+++LD+
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL 164
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 260 bits (638), Expect = 3e-70
Identities = 118/164 (71%), Positives = 137/164 (83%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDI 512
+KLC VR + G K +PYL T+DGRT+RYPDPLI ND+++LD+
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL 164
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 260 bits (638), Expect = 3e-70
Identities = 118/164 (71%), Positives = 137/164 (83%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDI 512
+KLC VR + G K +PYL T+DGRT+RYPDPLI ND+++LD+
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL 164
>At4g23310.1 68417.m03359 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 830
Score = 31.5 bits (68), Expect = 0.35
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 247 TFP--STLMRRCFTILST-SLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 92
TFP ST M T+LST S P ++Y + F+ T+GKH + G RG +P
Sbjct: 151 TFPRSSTYMTNLITLLSTLSSPSASYSTGFQNA-TAGKHPDRVTGLFNCRGDVSP 204
>At4g38440.1 68417.m05432 expressed protein
Length = 1465
Score = 31.1 bits (67), Expect = 0.47
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +3
Query: 48 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL----VIFLRNRLKYALTGNEVLKIV 215
+R+ P W L + V++ + STGP + E L + V FL + G+ +V
Sbjct: 1140 QRMPLPPHWFLSAISAVHSGKTSTGPPESTELLEVAKAGVFFLAGLESSSGFGSLPSPVV 1199
Query: 216 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRF 347
L+ K T MD++ + T L+ + ++ G+F
Sbjct: 1200 SVPLV---WKFHALSTVLLVGMDIIEDKNTRNLYNYLQELYGQF 1240
>At2g20210.1 68415.m02363 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 604
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = -3
Query: 400 RTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGS 254
RTLHSL+ S + R+ + F++ + ++S + S+D + N +G++ +
Sbjct: 291 RTLHSLHFGDSNLDRYFARMVFSTLLD-SSSNLSSLDLSENNISGWLST 338
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 199 SLPVSAYLSRFRRKITSGK-HSRSLWGPVEGRGAYTPPSLSNIHAL 65
S+ V ++SR R K HS LWG + TPP+ ++ L
Sbjct: 25 SIDVKNFISRARALYEHWKKHSADLWGSADALAIATPPASDDLRYL 70
>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
putative / steroid 5-alpha-reductase, putative identical
to gi:1280611; contains a steroid 5-alpha reductase,
C-terminal domain
Length = 262
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 235 TLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGP 119
T R C L + P +A L +F + GKH+R+ WGP
Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45
>At1g72240.1 68414.m08352 expressed protein
Length = 133
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -3
Query: 352 IVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLS 173
I +L T + + + + ++ A Y GS T S+ + C++ S S S
Sbjct: 49 ICSLCLTERLSKLSLEYYDYTKKAVETATYCGSTSTSSSSSVSSCYSSSSVSSCSSPLQY 108
Query: 172 RFRRKITSGKHSRSLW 125
R+R K GK L+
Sbjct: 109 RYREKKKDGKKQSFLF 124
>At1g17580.1 68414.m02165 myosin, putative similar to myosin
GI:433663 from (Arabidopsis thaliana)
Length = 1520
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = -3
Query: 487 TLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNS 308
T M+ YRS+R + + L G +A R +H + +R V F Y+ R S
Sbjct: 745 TCMARKNYRSIRNAAIVLQSFLRGEIA--RAVHKKLRIEAAALR--VQKNFRRYVDR-KS 799
Query: 307 FVFSMDTTSINPAG 266
FV + +T + G
Sbjct: 800 FVTTRSSTIVLQTG 813
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 168 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 302
N ++A+T NE+ +K+RL D ++R D Y G ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 168 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 302
N ++A+T NE+ +K+RL D ++R D Y G ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 168 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 302
N ++A+T NE+ +K+RL D ++R D Y G ++ + EK
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 749
>At1g61350.1 68414.m06914 armadillo/beta-catenin repeat family
protein armadillo/beta-catenin-like repeats,
Pfam:PF00514
Length = 573
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = -2
Query: 209 LKHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQHPCFRGV*TLQVLL 36
L++L+ E + + +EDH F +L+G++ +V++ L+ C + T +L+
Sbjct: 297 LRNLVGVEEIKRFMIEEDHTVATFIKLIGSKEEIVQVNSIDLLLSMCCKDEQTRDILV 354
>At2g36900.1 68415.m04526 Golgi SNARE protein membrin 11 (MEMB11) /
Golgi SNAP receptor complex member 2-1 identical to
SP:Q9SJL6; identical to Probable 27 kDa Golgi SNARE
protein (Golgi SNAP receptor complex member 2)
(SP:Q9SJL6) [Arabidopsis thaliana]
Length = 225
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 199 SLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAY 98
+L + Y+SR +RK+ K L G G GA+
Sbjct: 95 NLSLEKYMSRNQRKMLEAKERADLLGRASGEGAH 128
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,878,996
Number of Sequences: 28952
Number of extensions: 251592
Number of successful extensions: 736
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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