Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H01
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear horm...    29   2.4  
AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical...    28   5.6  
Z83109-11|CAJ43454.1|  345|Caenorhabditis elegans Hypothetical p...    27   9.7  

>AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 122 protein.
          Length = 374

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 149 VFLFYKEDHNFFSFFIESRII 211
           +++  K+DH+FF +F+ES+ I
Sbjct: 354 MYIMNKQDHSFFKYFVESKRI 374


>AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical
           protein Y62H9A.10 protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 367 PD*FVDNICDKYQSILDYF---LVLRRN*CTVRVEI*VQTIIYLNL 495
           P  FVDNIC  + S+L +F   L  +R  C V + I +   IY+ +
Sbjct: 165 PPKFVDNICFNFSSVLPWFRNYLAYQRMLC-VFIPIIIYFFIYIRM 209


>Z83109-11|CAJ43454.1|  345|Caenorhabditis elegans Hypothetical
           protein F44G3.12 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 143 YINRVSGLGVTAASRLHRARDMRNYINLNCYKITIIHNMLLI 18
           +IN ++GL +   SRL R+   +NYI     KI + ++ + +
Sbjct: 99  FINFMNGLKIRKVSRLLRSAISQNYIGFKEIKIEVKNDWICL 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,890,208
Number of Sequences: 27780
Number of extensions: 225610
Number of successful extensions: 516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)