Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G24
         (188 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   0.21 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    20   2.0  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    20   2.0  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    20   2.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    20   2.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           20   2.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    19   3.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    19   3.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    19   3.5  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    19   4.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    19   4.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    19   4.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        19   4.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    19   4.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    19   4.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    19   4.6  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            19   4.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           19   4.6  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    19   4.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    19   4.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    19   4.6  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    19   6.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    18   8.0  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.4 bits (48), Expect = 0.21
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 43  PPGPSAAFGMGTIRDRVSMHRIAPCG 120
           PP  S  + MG+  D+ S +  + CG
Sbjct: 325 PPQDSMGYSMGSAYDQSSAYDASSCG 350


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 93  HAIPYRPHPKCGGRPRGV 40
           H   Y P+P  G  P G+
Sbjct: 172 HYARYHPYPNFGVPPAGI 189


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 42  PPGAVRRIWDGDDTGSRE 95
           P G V +I D D TG+ E
Sbjct: 195 PIGTVFKIGDADGTGNCE 212


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 42  PPGAVRRIWDGDDTGSRE 95
           P G V +I D D TG+ E
Sbjct: 195 PIGTVFKIGDADGTGNCE 212


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
          protein protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 93 HAIPYRPHP 67
          H  PY PHP
Sbjct: 73 HGPPYAPHP 81


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 19.8 bits (39), Expect = 2.6
 Identities = 6/24 (25%), Positives = 12/24 (50%)
 Frame = +3

Query: 102 PHRPLRQAQWASSVQQSNGDGWEN 173
           P R   + QW ++   ++ + W N
Sbjct: 355 PKRSSDEQQWRNNQPSTSNNRWHN 378


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 88  DPVSSPSQMRRTAPGGL 38
           +PV  P +  +T PG L
Sbjct: 96  EPVHRPGRCCKTCPGDL 112


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +1

Query: 40  NPPGPSA--AFGMGTIRDRVSMHRIAPCGKPNGPRPFNSPM 156
           +P GP++  +F MG     +S     P      P P N P+
Sbjct: 39  SPQGPNSPVSFSMGGHGSLLSPSGNTPNKSSTSPYPPNHPL 79


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 186 ASGSGSPTHPH 154
           A G+G P H H
Sbjct: 296 ADGAGGPLHDH 306


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 94  SRDPVSSPSQMRRTAPGGL 38
           S  P+S+PS    T   GL
Sbjct: 125 STPPLSTPSNSNATKSSGL 143


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 94  SRDPVSSPSQMRRTAPGGL 38
           S  P+S+PS    T   GL
Sbjct: 125 STPPLSTPSNSNATKSSGL 143


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 94  SRDPVSSPSQMRRTAPGGL 38
           S  P+S+PS    T   GL
Sbjct: 125 STPPLSTPSNSNATKSSGL 143


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -3

Query: 84  PYRPHP 67
           P+RPHP
Sbjct: 126 PFRPHP 131


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 94  SRDPVSSPSQMRRTAPGGL 38
           S  P+S+PS    T   GL
Sbjct: 125 STPPLSTPSNSNATKSSGL 143


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 94  SRDPVSSPSQMRRTAPGGL 38
           S  P+S+PS    T   GL
Sbjct: 125 STPPLSTPSNSNATKSSGL 143


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 94  SRDPVSSPSQMRRTAPGGL 38
           S  P+S+PS    T   GL
Sbjct: 81  STPPLSTPSNSNATKSSGL 99


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 106 IAPCGKPNGPRPFNSPMGMG 165
           I+P   P    P + P GMG
Sbjct: 87  ISPQNTPPAGYPMDVPHGMG 106



 Score = 18.6 bits (36), Expect = 6.1
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -3

Query: 153 WTVERTRPIGLAAGGDAVHAHAIPYRPHP 67
           + V +TR     AGG      A    PHP
Sbjct: 19  FVVVKTRSNSPEAGGGGFWLAAASGAPHP 47


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 94  SRDPVSSPSQMRRTAPGGL 38
           S  P+S+PS    T   GL
Sbjct: 125 STPPLSTPSNSNATKSSGL 143


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 94  SRDPVSSPSQMRRTAPGGL 38
           S  P+S+PS    T   GL
Sbjct: 125 STPPLSTPSNSNATKSSGL 143


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 94  SRDPVSSPSQMRRTAPGGL 38
           S  P+S+PS    T   GL
Sbjct: 125 STPPLSTPSNSNATKSSGL 143


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 106 IAPCGKPNGPRPFNSPMGMG 165
           I+P   P    P + P GMG
Sbjct: 87  ISPQNTPPAGYPMDVPHGMG 106



 Score = 18.6 bits (36), Expect = 6.1
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -3

Query: 153 WTVERTRPIGLAAGGDAVHAHAIPYRPHP 67
           + V +TR     AGG      A    PHP
Sbjct: 19  FVVVKTRSNSPEAGGGGFWLAAASGAPHP 47


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 54  VRRIWDGDDTGSRE 95
           +R +WD DD   R+
Sbjct: 101 LRAVWDPDDVFIRK 114


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 18.2 bits (35), Expect = 8.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 82  VSSPSQMRRTAPGGL 38
           +SSPS  +  +PG L
Sbjct: 72  ISSPSSTKSGSPGFL 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,116
Number of Sequences: 336
Number of extensions: 1056
Number of successful extensions: 32
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 122,585
effective HSP length: 42
effective length of database: 108,473
effective search space used:  2169460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)