Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G24
         (188 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)             27   2.4  
SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.4  
SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_37933| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_27852| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_26888| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_24017| Best HMM Match : DUF646 (HMM E-Value=4.1)                    25   7.4  
SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)                 25   7.4  
SB_44413| Best HMM Match : rve (HMM E-Value=4.6e-17)                   25   9.7  
SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)                       25   9.7  
SB_3855| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.7  
SB_29579| Best HMM Match : Glyco_hydro_18 (HMM E-Value=1.4)            25   9.7  
SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.7  

>SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)
          Length = 771

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 15  VKRPEIP-TKPPGAVRRIWDGDDTGSREHAPHRPLRQAQWASSVQQSNGDGWE 170
           +++  IP T PP   R  W+ D    R+H    P+R A W S  Q  +G+ W+
Sbjct: 388 IRQQRIPGTFPPAPARAPWESDQWDKRQH----PMR-ASWESD-QNFHGN-WK 433


>SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 3   TRPDVKRPEIPTKPPGAVRRIWDGDDTGSREHAPHRP 113
           TR  VKRPE   K PGA   ++   D  S  + P  P
Sbjct: 323 TRKRVKRPEKLNKRPGAYSNLYGTFDIMSLRNCPVLP 359


>SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -3

Query: 171 SPTHPHWTVERT---RPIGLAAGGDAVHAHAIPYRPHP 67
           +P HPH   +RT    P+GL+      H H +  R  P
Sbjct: 356 APDHPHGLSKRTAPHHPLGLSKSTAPDHPHGVSKRTAP 393



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -3

Query: 171 SPTHPHWTVERTRP---IGLAAGGDAVHAHAIPYRPHP 67
           +P HPH   +RT P   +GL+      H H +  R  P
Sbjct: 92  APDHPHGLSKRTAPDHTLGLSKRTGPDHTHGVSKRTAP 129


>SB_37933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 171 SPTHP-HWTVERTRPIGLAAGG 109
           +P +P HW++ + RP+G A  G
Sbjct: 274 TPPYPQHWSIPQDRPVGRAGQG 295


>SB_27852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = +3

Query: 9   PDV-KRPEIPTKPPGAVRRIWDGDDTGSREHAPHRPLRQAQWASSVQQSNGDGWENRCLT 185
           PDV   PE+P  P GAV+ I       S     H+P     W      +N  G   R  T
Sbjct: 289 PDVIVTPELPVIPNGAVKAI-----PSSPSMVAHKPDSTCVWFDKSAMANNQGLYPRLQT 343


>SB_26888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 123 LAAGGDAVHAHAIPYRPHPKCGGRPR 46
           +  G +A++    P  PH   GG PR
Sbjct: 1   MTLGANAINTETKPVGPHNMAGGHPR 26


>SB_24017| Best HMM Match : DUF646 (HMM E-Value=4.1)
          Length = 486

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 123 LAAGGDAVHAHAIPYRPHPKCGGRPR 46
           +  G +A++    P  PH   GG PR
Sbjct: 377 MTLGANAINTETKPVGPHNMAGGHPR 402


>SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)
          Length = 529

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 85  PVSSPSQMRRTAP 47
           PVS+PSQ RRT P
Sbjct: 333 PVSTPSQQRRTPP 345


>SB_44413| Best HMM Match : rve (HMM E-Value=4.6e-17)
          Length = 878

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 123 LAAGGDAVHAHAIPYRPHPKCGGRPR 46
           +  GG+A++    P   H   GG PR
Sbjct: 538 ITLGGNAINTETKPVGAHSMAGGHPR 563


>SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 350

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 56  PPHLGWGRYG 85
           PP LGWG+YG
Sbjct: 141 PPLLGWGQYG 150


>SB_3855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 994

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 123 LAAGGDAVHAHAIPYRPHPKCGGRPR 46
           +  GG+A++    P   H   GG PR
Sbjct: 461 ITLGGNAINTETKPVGAHSMAGGHPR 486


>SB_29579| Best HMM Match : Glyco_hydro_18 (HMM E-Value=1.4)
          Length = 367

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 123 LAAGGDAVHAHAIPYRPHPKCGGRPR 46
           +  G +A++    P  PH   GG PR
Sbjct: 227 MTLGANAINTEIKPVGPHNMAGGHPR 252


>SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 87  IPYRPHPKCGGRPR 46
           +P+ PHP CG RPR
Sbjct: 268 VPH-PHPPCGPRPR 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,369,509
Number of Sequences: 59808
Number of extensions: 154693
Number of successful extensions: 513
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 41
effective length of database: 14,369,329
effective search space used: 301755909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)