Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G24
         (188 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    29   0.61 
Z82088-3|CAF32230.1|  978|Caenorhabditis elegans Hypothetical pr...    28   1.1  
Z82088-2|CAB05001.1|  705|Caenorhabditis elegans Hypothetical pr...    28   1.1  
Z82088-1|CAB05000.2|  901|Caenorhabditis elegans Hypothetical pr...    28   1.1  
Z81490-5|CAF32231.1|  978|Caenorhabditis elegans Hypothetical pr...    28   1.1  
Z81490-4|CAB04016.1|  705|Caenorhabditis elegans Hypothetical pr...    28   1.1  
Z81490-3|CAB04015.2|  901|Caenorhabditis elegans Hypothetical pr...    28   1.1  
U58764-3|AAB00725.1|  122|Caenorhabditis elegans Hypothetical pr...    28   1.1  
U27312-9|AAA68252.1|  239|Caenorhabditis elegans Hypothetical pr...    28   1.1  
AJ303082-1|CAC19896.1|  901|Caenorhabditis elegans PMR1 protein ...    28   1.1  
AJ303081-1|CAC19895.1|  901|Caenorhabditis elegans PMR1 protein ...    28   1.1  
Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical pr...    26   3.2  
U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z49907-5|CAA90087.1|  327|Caenorhabditis elegans Hypothetical pr...    26   4.3  
Z70286-1|CAA94294.2|  194|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U40800-6|AAA81492.1|  171|Caenorhabditis elegans Hypothetical pr...    25   7.5  
U23411-1|AAC46730.2|  231|Caenorhabditis elegans Hypothetical pr...    25   7.5  
L08403-6|AAA28020.1|  115|Caenorhabditis elegans Hypothetical pr...    25   7.5  

>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -3

Query: 177 SGSPTHPHWTVERTRPIGLAAGGDAVHAHAIPYRPHPKCGGRPR 46
           SG P  P    +   P G   G    H    P+RPHP    RPR
Sbjct: 67  SGQPPGPQGPSDLPGPSGAPPGPP--HPSGPPHRPHPHPSRRPR 108


>Z82088-3|CAF32230.1|  978|Caenorhabditis elegans Hypothetical
           protein ZK256.1c protein.
          Length = 978

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 165 THPHWTVERTRPIGLAAGGDAVHAHAIPYRPHPKCGGRPRGV 40
           T P     R+ P   A G D  H   I +     C GR RG+
Sbjct: 253 TEPKHKETRSVPAASATGSDVEHLTCIAFMGTLVCAGRGRGI 294


>Z82088-2|CAB05001.1|  705|Caenorhabditis elegans Hypothetical
           protein ZK256.1b protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 165 THPHWTVERTRPIGLAAGGDAVHAHAIPYRPHPKCGGRPRGV 40
           T P     R+ P   A G D  H   I +     C GR RG+
Sbjct: 176 TEPKHKETRSVPAASATGSDVEHLTCIAFMGTLVCAGRGRGI 217


>Z82088-1|CAB05000.2|  901|Caenorhabditis elegans Hypothetical
           protein ZK256.1a protein.
          Length = 901

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 165 THPHWTVERTRPIGLAAGGDAVHAHAIPYRPHPKCGGRPRGV 40
           T P     R+ P   A G D  H   I +     C GR RG+
Sbjct: 176 TEPKHKETRSVPAASATGSDVEHLTCIAFMGTLVCAGRGRGI 217


>Z81490-5|CAF32231.1|  978|Caenorhabditis elegans Hypothetical
           protein ZK256.1c protein.
          Length = 978

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 165 THPHWTVERTRPIGLAAGGDAVHAHAIPYRPHPKCGGRPRGV 40
           T P     R+ P   A G D  H   I +     C GR RG+
Sbjct: 253 TEPKHKETRSVPAASATGSDVEHLTCIAFMGTLVCAGRGRGI 294


>Z81490-4|CAB04016.1|  705|Caenorhabditis elegans Hypothetical
           protein ZK256.1b protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 165 THPHWTVERTRPIGLAAGGDAVHAHAIPYRPHPKCGGRPRGV 40
           T P     R+ P   A G D  H   I +     C GR RG+
Sbjct: 176 TEPKHKETRSVPAASATGSDVEHLTCIAFMGTLVCAGRGRGI 217


>Z81490-3|CAB04015.2|  901|Caenorhabditis elegans Hypothetical
           protein ZK256.1a protein.
          Length = 901

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 165 THPHWTVERTRPIGLAAGGDAVHAHAIPYRPHPKCGGRPRGV 40
           T P     R+ P   A G D  H   I +     C GR RG+
Sbjct: 176 TEPKHKETRSVPAASATGSDVEHLTCIAFMGTLVCAGRGRGI 217


>U58764-3|AAB00725.1|  122|Caenorhabditis elegans Hypothetical
           protein M03E7.2 protein.
          Length = 122

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +1

Query: 34  PLNPPGPSAAFGMGTIRDRVSMHRIAPCGKPNGPRPFN---SPMGMG 165
           P+ PPG S  +GMG +        + P G   G  P+    SP GMG
Sbjct: 59  PMPPPGMS-PYGMGGMGGMSPYGMMGPMGGMGGMSPYGGGMSPYGMG 104


>U27312-9|AAA68252.1|  239|Caenorhabditis elegans Hypothetical
           protein F26A1.11 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 21  RPEIPTKPPGAVRRIWDGDDTGSREHAPHRPLRQAQWASSVQQSNGDGW 167
           RP  P +PP   R          R   P +P  +A W + VQ+ NG GW
Sbjct: 32  RPPRPPRPPSPSRPQRPPPSRPQRPPPPRQPRCEAGW-TLVQRQNG-GW 78


>AJ303082-1|CAC19896.1|  901|Caenorhabditis elegans PMR1 protein
           protein.
          Length = 901

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 165 THPHWTVERTRPIGLAAGGDAVHAHAIPYRPHPKCGGRPRGV 40
           T P     R+ P   A G D  H   I +     C GR RG+
Sbjct: 176 TEPKHKETRSVPAASATGSDVEHLTCIAFMGTLVCAGRGRGI 217


>AJ303081-1|CAC19895.1|  901|Caenorhabditis elegans PMR1 protein
           protein.
          Length = 901

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 165 THPHWTVERTRPIGLAAGGDAVHAHAIPYRPHPKCGGRPRGV 40
           T P     R+ P   A G D  H   I +     C GR RG+
Sbjct: 176 TEPKHKETRSVPAASATGSDVEHLTCIAFMGTLVCAGRGRGI 217


>Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical
           protein F33A8.9 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = +1

Query: 25  RKYPLNPPGPSAAFGM-GTIRDRVSMHRIAPCGKPNGPRPFNSPMGMGGR 171
           R  P  PPGP    G  G    +       P G P  P P  +P G+G R
Sbjct: 206 RSGPPGPPGPKGPRGTPGPTGPKNFYITSGPPGPPGPPGPPGNPGGIGPR 255


>Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical
           protein C53B4.5 protein.
          Length = 289

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 28  KYPLNPPGPSAAFG-MGTIRDRVSMHRIAPCGKPNGPRPFNSPMGMGGR 171
           K PL PPGP    G  GT  ++       P GKP GP     P G  GR
Sbjct: 155 KGPLGPPGPPGPEGPNGTAGNKGPAGPPGPGGKP-GPA---GPPGENGR 199


>U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical
           protein B0403.5 protein.
          Length = 413

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 15  VKRPEIPTKPPGAVRRIWDGDDTGSREHAPHRPLRQAQWASS 140
           V   E+P KPP  ++RI  G  T +++      + +  +AS+
Sbjct: 306 VMTAELPPKPPRVLKRIHAGGPTDTKDGVQPASVTRISFAST 347


>Z49907-5|CAA90087.1|  327|Caenorhabditis elegans Hypothetical
           protein B0491.5 protein.
          Length = 327

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 25  RKYPLNPPGPSAAFGMGTIRDRVSMHRIAPCG-KPNGPRPFNSPMGMG 165
           +++P     P+ +  M T +D +  + + P    P GPR F+SP+  G
Sbjct: 124 KEHPGLSVSPTLSDNMLTPKDELGRNAVLPNSWYPAGPRFFDSPLNEG 171


>Z70286-1|CAA94294.2|  194|Caenorhabditis elegans Hypothetical
           protein K08C7.4 protein.
          Length = 194

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = +3

Query: 21  RPEIPTKPPGAVRRIWDGDDTGSREHAPHRPLRQAQWASSVQQSNG 158
           RP    K PG+     DG+     E A   P R  +   S  Q  G
Sbjct: 57  RPVRGKKSPGSDEEAMDGEYEADEEEAALEPRRSTRGKRSYDQETG 102


>U40800-6|AAA81492.1|  171|Caenorhabditis elegans Hypothetical
           protein D2096.6 protein.
          Length = 171

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 132 PIGLAAGGDAVHAHAIPYRPHPKC 61
           P+G   GG ++     P RP P+C
Sbjct: 48  PVGQCPGGPSLPIECDPKRPWPQC 71


>U23411-1|AAC46730.2|  231|Caenorhabditis elegans Hypothetical
           protein T25E4.1 protein.
          Length = 231

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 132 PIGLAAGGDAVHAHAIPYRPHPKC 61
           P+G   GG ++     P RP P+C
Sbjct: 107 PVGQCPGGPSLPIECDPKRPWPQC 130


>L08403-6|AAA28020.1|  115|Caenorhabditis elegans Hypothetical
           protein F42H10.2 protein.
          Length = 115

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 31  YPLNPPGPSAAFGMGTIRDRVSMHRI-APCG 120
           YP N PGP+ A G          H + +PCG
Sbjct: 37  YPSNNPGPTTADGQINFECHCVGHLVGSPCG 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,173,217
Number of Sequences: 27780
Number of extensions: 107104
Number of successful extensions: 417
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)