Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G24
(188 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00752.1 68417.m00103 UBX domain-containing protein similar t... 32 0.046
At1g74740.1 68414.m08660 calcium-dependent protein kinase, putat... 27 1.7
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 26 3.0
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 26 3.0
At3g56680.1 68416.m06305 expressed protein 26 3.0
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL... 26 3.0
At4g24680.1 68417.m03533 expressed protein 26 4.0
At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovin... 25 5.3
At4g37000.1 68417.m05242 accelerated cell death 2 (ACD2) identic... 25 5.3
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 25 5.3
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 25 5.3
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 25 5.3
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 25 5.3
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 25 5.3
At5g43770.1 68418.m05353 proline-rich family protein contains pr... 25 7.0
At5g11700.1 68418.m01367 glycine-rich protein predicted protein,... 25 7.0
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 25 7.0
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 25 7.0
At2g14960.1 68415.m01701 auxin-responsive GH3 family protein sim... 25 7.0
At1g61730.1 68414.m06962 DNA-binding storekeeper protein-related... 25 7.0
At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containi... 25 7.0
At5g34860.1 68418.m04105 hypothetical protein 25 9.3
At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / sta... 25 9.3
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ... 25 9.3
>At4g00752.1 68417.m00103 UBX domain-containing protein similar to
Ara4-interacting protein [Arabidopsis thaliana]
GI:13160609; contains Pfam profiles PF00789: UBX domain,
PF02809: Ubiquitin interaction motif
Length = 469
Score = 32.3 bits (70), Expect = 0.046
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 177 SGSPTHPHWTVERTRPIGLAAGGDAVHAHAIPY 79
+G P H W + TRP GL A GD H+ Y
Sbjct: 135 TGFPAHSTWGNDHTRPPGLGAVGDGYARHSPSY 167
>At1g74740.1 68414.m08660 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase [Arabidopsis thaliana] gi|604880|dbj|BAA04829;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 541
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 PDVKRPEIPTKPP-GAVRRIWDGDDTGSREHAPHR 110
PD +P KPP G R +D D G R HAP R
Sbjct: 12 PDNSKPNQKKKPPRGRQRNPYDDPD-GLRTHAPLR 45
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 34 PLNPPGPSAAFGMGTIRDRVSMHRIAPCGKPNGPRPFNSP 153
P PGP +F G + S +AP PN P P +P
Sbjct: 75 PSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEP-PAETP 113
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 28 KYPLNPPGPSAAFGMGTIRDRVSMHRIAPCGKPNGPRPFNSPM 156
K P+ PP P+A + +++ + +P P PF+SP+
Sbjct: 281 KSPMPPPSPTAQISLSSLKSPIP----SPATITAPPPPFSSPL 319
>At3g56680.1 68416.m06305 expressed protein
Length = 353
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 99 APHRPLRQAQWASSVQQSNGDGWENRCL 182
A HR A++VQ+S DG ENR L
Sbjct: 73 AAHRVANHYGLATAVQESGADGNENRIL 100
>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
(PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
(EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
{Arabidopsis thaliana}; contains Pfam profiles: PF00614
phospholipase D.active site motif, PF00168 C2 domain
Length = 1083
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 177 SGSPTHPHWTVERTRPIGLAAGGDAVHAHAIPYRPHP 67
SGS + P +P LAA H H+ Y+P P
Sbjct: 70 SGSHSGPLDYSHNPQPSSLAAAPPEYHRHSFDYQPSP 106
>At4g24680.1 68417.m03533 expressed protein
Length = 1480
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 49 GPSAAFGMGTIRDRVSMHRIAPCGKPNGPRPFNSPMGMGG 168
GP +G + RD + G+P GP +N+ G GG
Sbjct: 448 GPPMGYGSPSNRD------LPFAGRPTGPHAYNNHSGQGG 481
>At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovine,
PIR2:I46014
Length = 452
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 75 DDTGSREHAPHRPLRQAQWASSVQQSNGDGWENR 176
D SR+ P R WA++ + +G+G+E R
Sbjct: 151 DREPSRDSGPSRADEDDNWAAAKKPISGNGFERR 184
>At4g37000.1 68417.m05242 accelerated cell death 2 (ACD2) identical
to accelerated cell death 2 (ACD2) GI:12484129 from
[Arabidopsis thaliana]
Length = 319
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 70 MGTIRDRVSMHRIAPCGKPNGPRPFNSPMG 159
M T+ +R+ ++ PC P R FN+P G
Sbjct: 70 MSTVENRLQS-QLLPCNLPPDVRNFNNPNG 98
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 104 RCMLTRSRIVPIPNAADGPGGF 39
+ +T ++ P P A D PGGF
Sbjct: 30 KSFMTEGKVSPDPVAIDAPGGF 51
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 104 RCMLTRSRIVPIPNAADGPGGF 39
+ +T ++ P P A D PGGF
Sbjct: 30 KSFMTEGKVSPDPVAIDAPGGF 51
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 104 RCMLTRSRIVPIPNAADGPGGF 39
+ +T ++ P P A D PGGF
Sbjct: 30 KSFMTEGKVSPDPVAIDAPGGF 51
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 104 RCMLTRSRIVPIPNAADGPGGF 39
+ +T ++ P P A D PGGF
Sbjct: 30 KSFMTEGKVSPDPVAIDAPGGF 51
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 104 RCMLTRSRIVPIPNAADGPGGF 39
+ +T ++ P P A D PGGF
Sbjct: 30 KSFMTEGKVSPDPVAIDAPGGF 51
>At5g43770.1 68418.m05353 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 187
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +3
Query: 9 PDVKRPEIPTKPPGAVRRIWD 71
PD P P PP V IW+
Sbjct: 139 PDTPNPPTPKTPPDVVPPIWE 159
>At5g11700.1 68418.m01367 glycine-rich protein predicted protein,
Arabidopsis thaliana
Length = 1411
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 150 TVERTRPIGLAAGGDAVHAHAIPYRPHPKCGGRPRGV 40
T+E T A G AV+ + P P+ G P+G+
Sbjct: 142 TLELTAGNASFANGSAVNTTGLAGSPPPQTSGTPQGI 178
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 6 RPDVKRPEIPTKPPGAVRRIWDGDDTGSREHAPH-RPLRQAQWASSVQQSNGDG 164
+P++K ++P K R +D DD + H P ++ WA +G G
Sbjct: 32 QPEMKSLQLPAKKRKQTRVDYDDDDAENSNPTYHCLPAKKRIWAIDPDLLSGGG 85
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 6 RPDVKRPEIPTKPPGAVRRIWDGDDTGSREHAPH-RPLRQAQWASSVQQSNGDG 164
+P++K ++P K R +D DD + H P ++ WA +G G
Sbjct: 32 QPEMKSLQLPAKKRKQTRVDYDDDDAENSNPTYHCLPAKKRIWAIDPDLLSGGG 85
>At2g14960.1 68415.m01701 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 590
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 171 SPTHPHWTVERTR 133
SP+ PHWT ER R
Sbjct: 577 SPSLPHWTPERRR 589
>At1g61730.1 68414.m06962 DNA-binding storekeeper protein-related
contains Pfam profile: PF04504 protein of unknown
function, DUF573; similar to storekeeper protein
GI:14268476 [Solanum tuberosum]
Length = 376
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 15 VKRPEIPTKPPGAVRRIWDGDD 80
VK+ E K PG +R+W +D
Sbjct: 142 VKKDEESVKKPGGFQRLWSEED 163
>At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat;
similar to ESTs gb|R30192 and gb|AA651017
Length = 913
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 84 GSREHAPHRPLRQAQWASSVQQSNGDGWEN 173
G+ AP +P +A W S + GW N
Sbjct: 624 GTTPAAPQQPRDRAPWTSQGVVHSNSGWAN 653
>At5g34860.1 68418.m04105 hypothetical protein
Length = 394
Score = 24.6 bits (51), Expect = 9.3
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 21 RPEIPTKPPGAVRRIWDGDDTGSREHAPHRPLRQAQWAS----SVQQSNGDG 164
R P + G R+ D DD S +AP R +QAQ S S + NG+G
Sbjct: 305 REGAPPRKRGRPRKSKDNDDPWSIHNAPRR-WQQAQSQSTPTCSQRTKNGEG 355
>At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / starch
branching enzyme class II (SBE2-2) identical to starch
branching enzyme class II [Arabidopsis thaliana]
GI:726490
Length = 716
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 186 ASGSGSPTHPHWTVERTRPIGLAAGGDAVHAHA 88
+S G+P ++R +GL D VH+HA
Sbjct: 265 SSRCGTPEELKSLIDRAHELGLVVLMDIVHSHA 297
>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain; ESTs gb|T44428 and gb|AA395440 come from this
gene
Length = 1218
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 112 PCGKPNGPRPFNSPM 156
P G N PRP N PM
Sbjct: 179 PAGGTNAPRPANQPM 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,048,794
Number of Sequences: 28952
Number of extensions: 99295
Number of successful extensions: 302
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,070,560
effective HSP length: 42
effective length of database: 10,854,576
effective search space used: 217091520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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