Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G23
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193... 30 1.1
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 29 1.9
02_04_0596 + 24195863-24196179,24196257-24196359 27 5.8
02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924... 27 5.8
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 27 7.7
03_06_0015 - 31036091-31036202,31037839-31037916,31038408-310386... 27 7.7
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 27 7.7
>01_06_0873 +
32617428-32617532,32618166-32618234,32619195-32619380,
32619687-32619776,32620389-32620462,32621149-32621260,
32621413-32621468,32621826-32621880,32621965-32622021,
32622696-32622797,32623467-32623547,32623756-32623808,
32625245-32625314,32626540-32626603,32627339-32627487,
32627564-32627719,32628011-32628108,32628763-32628847,
32628932-32628997,32629066-32629125,32629408-32629494,
32630307-32630360,32630538-32630576,32630651-32630779,
32630859-32630911,32630984-32631032,32632240-32632298,
32633111-32633259,32633338-32633492,32633719-32633847,
32633932-32634017,32634220-32634335,32634429-32634541,
32635335-32635458,32635540-32635658,32636289-32636490,
32636586-32636757,32637852-32638176,32638442-32638529,
32638970-32639059,32639169-32639370,32639681-32639705
Length = 1450
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +1
Query: 88 KGQIGLSVASQRYVRWEILVLRLYSATIVHENRSRLNFEHE*VRIDGPLYIKFLFL 255
+G+ G + +R V+RLYS+++V E+ LN + R+D PL+ + L L
Sbjct: 270 EGEAGEPAFRRLVLRLVAHVIRLYSSSLVTESEVFLNMLVKVTRLDLPLWHQILVL 325
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 119 SGTSAGKYSCYACIRRPSSTKIDH 190
+G+ G + +AC+RRPSS DH
Sbjct: 783 AGSRGGDDAAHACLRRPSSPSPDH 806
>02_04_0596 + 24195863-24196179,24196257-24196359
Length = 139
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -2
Query: 104 RPIWPFRACSFD*QALR-PCSCQCC 33
R WP A D A+R PC+C CC
Sbjct: 50 RTNWPLVAGMTDVMAVREPCACTCC 74
>02_02_0350 +
9239138-9240218,9240755-9240906,9241392-9241457,
9242715-9242951
Length = 511
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 154 LYSATIVHENRSRLNFEHE*VRIDG 228
L T+ +N+++L+FE E +RIDG
Sbjct: 261 LTRVTVKEDNQAKLHFEEETLRIDG 285
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 199 SSDVIDFRGRWSPNTSVARVFPSGRTAGLRHSDRFGLFARAVLTDKH 59
SS+V+DFR +S S+ R+ + DRF + + D+H
Sbjct: 2005 SSEVVDFRTHFSGQRSLITRDELERSPDILRDDRFAVRCDLTVMDEH 2051
>03_06_0015 -
31036091-31036202,31037839-31037916,31038408-31038655,
31038744-31038792,31038919-31039890,31040059-31040894
Length = 764
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 40 WHEHGRNACQSKLHARKGQIGLSVASQRYV-RWEILVLRLYSATIVHENRSRLNF 201
WH + C H RK ++ + A++R V + + ++ ++T V + + RL F
Sbjct: 588 WHAQVMSGCSKTHHTRKPELDWAHATRRLVEKVDAENMKTKNSTFVSQAQKRLAF 642
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -3
Query: 226 HRSVLIRARSSDVIDFRGRWSPNTSVARVFPSGRTAGLRHSDRFGLFARAVLTDKH-YAH 50
H ++ A D+++ + P+TSV + G+R DR L A +K AH
Sbjct: 315 HEVAVLFADHKDLLEEFQHFLPDTSVPPQAVAPSRPGIRRDDRTSLVPPASRNEKRDKAH 374
Query: 49 VHANVAPFER 20
HA+ +R
Sbjct: 375 PHADRESVDR 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,707,290
Number of Sequences: 37544
Number of extensions: 198546
Number of successful extensions: 498
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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