Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G23
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92804-4|CAB07251.1|  335|Caenorhabditis elegans Hypothetical pr...    31   0.56 
AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ...    31   0.56 
Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical pr...    27   5.2  

>Z92804-4|CAB07251.1|  335|Caenorhabditis elegans Hypothetical
           protein K05D4.6 protein.
          Length = 335

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 19/69 (27%), Positives = 38/69 (55%)
 Frame = +1

Query: 94  QIGLSVASQRYVRWEILVLRLYSATIVHENRSRLNFEHE*VRIDGPLYIKFLFL*ISYNL 273
           +IG++++ Q Y+   +L++   + T + ENR  + F        G ++    F  I+Y+L
Sbjct: 87  KIGVNISLQVYIMVTLLMMVAVATTAIFENRFYIMFADHTWWSWGRVF----FYLINYSL 142

Query: 274 YILFSIPTV 300
            +L+ +PTV
Sbjct: 143 ALLYFVPTV 151


>AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ion
           channel protein 12 protein.
          Length = 425

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = -2

Query: 389 YQRINEKKMIYFFTK*TYKVKRDSIRN--SMITVGIENKIYKLYEIHKKRNFI 237
           Y  INE++++    K  Y+  R  ++N  SM+TV I  +IY L E++++   I
Sbjct: 24  YPEINERELVKHLMKDYYQFTRP-VKNYSSMLTVTIMPQIYNLVEVNEQNEQI 75


>Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical
           protein ZC506.4b protein.
          Length = 954

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 151 VARVFPSGRTAGLRHSDRFGLFARAVLTDKHYAHVHANVA 32
           +A+V P+   A L   +RF  FAR V +D + A     +A
Sbjct: 172 IAQVSPASTNADLSDKNRFEYFARTVPSDDYQAMAMVEIA 211


>Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical
           protein ZC506.4a protein.
          Length = 999

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 151 VARVFPSGRTAGLRHSDRFGLFARAVLTDKHYAHVHANVA 32
           +A+V P+   A L   +RF  FAR V +D + A     +A
Sbjct: 217 IAQVSPASTNADLSDKNRFEYFARTVPSDDYQAMAMVEIA 256


>Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical
           protein T09F5.8 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 94  QIGLSVASQRYVRWEILVLRLYSATIVHENRSRLNF-EHE*VRIDGPLYIKFLFL*ISYN 270
           +IG+    Q Y+   +L++   S   + ENR  + F E+   R     Y + +F  I+Y+
Sbjct: 86  KIGMDRDLQVYIMVTLLMMVAVSTISIFENRFYILFAEYTWWR-----YGRIVFYIINYS 140

Query: 271 LYILFSIPTV 300
           L +L+ +PTV
Sbjct: 141 LALLYFVPTV 150


>Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical
           protein K11E4.4 protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 398 CERYQRINEKKMIYFFTK*TYKVKRDSIRNSMITVGIENKIYK 270
           CE  ++  E ++ + F     KV   S R S++ VG+ N  YK
Sbjct: 445 CETLRKQKEAQLDFLFVSKVDKVVSASERGSILYVGVANVEYK 487


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,948,103
Number of Sequences: 27780
Number of extensions: 195969
Number of successful extensions: 544
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)