Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G23
(474 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 25 0.55
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 23 1.7
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 23 1.7
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 22 3.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.1
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 21 5.1
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 21 5.1
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 21 6.7
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 6.7
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 21 6.7
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 24.6 bits (51), Expect = 0.55
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 53 GVMLVSQNCTREKAK-SV*VSQASGTSAGKYSCY 151
G +L S + R+ + S+ + + T AG+YSCY
Sbjct: 1314 GAVLQSSDRLRQLPEGSLFIKEVDRTDAGEYSCY 1347
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 2 HEAVSESLKWGNIGMNM 52
HEA++E+L N+G N+
Sbjct: 296 HEALTEALPGDNVGFNV 312
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 23.0 bits (47), Expect = 1.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 2 HEAVSESLKWGNIGMNM 52
HEA++E+L N+G N+
Sbjct: 7 HEALTEALPGDNVGFNV 23
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 21.8 bits (44), Expect = 3.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -2
Query: 371 KKMIYFFTK*TYKVKRDSIRNSMITVGIENKIYKLYEIHKK 249
K +IY F K +D +++ N +YKL + KK
Sbjct: 531 KAIIYGFNVNATKQIKDEANKKGVSLRFYNVVYKLIDNIKK 571
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 5.1
Identities = 13/51 (25%), Positives = 20/51 (39%)
Frame = +1
Query: 277 ILFSIPTVXXXXXXXXXXXXYVYFVKKYIIFFSLIR*YLSQFEANLISDYN 429
++F + V YF YII+ SL + + L+S YN
Sbjct: 17 VIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYN 67
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 5.1
Identities = 13/51 (25%), Positives = 20/51 (39%)
Frame = +1
Query: 277 ILFSIPTVXXXXXXXXXXXXYVYFVKKYIIFFSLIR*YLSQFEANLISDYN 429
++F + V YF YII+ SL + + L+S YN
Sbjct: 17 VIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYN 67
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 21.4 bits (43), Expect = 5.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +2
Query: 2 HEAVSESLKWGNIGMNM 52
HEA+ E++ N+G N+
Sbjct: 239 HEALQEAVPGDNVGFNV 255
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +2
Query: 2 HEAVSESLKWGNIGMNM 52
HEA+ E++ N+G N+
Sbjct: 296 HEALQEAVPGDNVGFNV 312
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.0 bits (42), Expect = 6.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 113 QASGTSAGKYSCYAC 157
+ASG G YSC C
Sbjct: 116 RASGKHYGVYSCEGC 130
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.0 bits (42), Expect = 6.7
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -3
Query: 421 PKSNSLQIVKDINESMKKK*YIFLQNKRIK 332
PK S+ ++ NE+ +K+ + L + +IK
Sbjct: 1489 PKDKSVSVLSRENEAGQKEVKVLLGSDKIK 1518
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.0 bits (42), Expect = 6.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 113 QASGTSAGKYSCYAC 157
+ASG G YSC C
Sbjct: 116 RASGKHYGVYSCEGC 130
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,423
Number of Sequences: 438
Number of extensions: 2780
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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