BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_G23 (474 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 28 2.8 At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636... 28 3.7 At3g17850.1 68416.m02275 protein kinase, putative similar to IRE... 27 6.5 At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 27 8.6 At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 27 8.6 At3g42480.1 68416.m04405 hypothetical protein 27 8.6 >At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing protein / MATH domain-containing protein Length = 564 Score = 28.3 bits (60), Expect = 2.8 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = -2 Query: 230 GPSIRTYSCSKFRRDRFSWTMVAEYKRSTSISQRTYRWLATLRPI 96 GP+++T C RR RF T+V + + S RW P+ Sbjct: 54 GPTLKTLPCGCRRRIRFRLTVVNQLSENLSRRGEGKRWFDKKLPL 98 >At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636: Uncharacterized ACR, COG1565 Length = 471 Score = 27.9 bits (59), Expect = 3.7 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +2 Query: 2 HEAVSESLKWGNIGMNMGVMLVSQNCTREKAKSV 103 H +++S G++G+N V + QNC E+A+S+ Sbjct: 390 HGPMTQSQFLGSLGINFRVDALLQNCNDEQAESL 423 >At3g17850.1 68416.m02275 protein kinase, putative similar to IRE (incomplete root hair elongation) [Arabidopsis thaliana] gi|6729346|dbj|BAA89783; contains protein kinase domain Pfam:PF00069 Length = 1296 Score = 27.1 bits (57), Expect = 6.5 Identities = 19/61 (31%), Positives = 25/61 (40%) Frame = -3 Query: 283 IKYINYMKFTKKGTLYRAAHRSVLIRARSSDVIDFRGRWSPNTSVARVFPSGRTAGLRHS 104 +K + K TL R V + D FR R+S NTS + FPSG + Sbjct: 1165 VKQHIFFKDINWDTLARQKAAFVPASESAIDTSYFRSRYSWNTSDEQFFPSGEVPDYSDA 1224 Query: 103 D 101 D Sbjct: 1225 D 1225 >At4g14310.2 68417.m02205 peroxisomal membrane protein-related contains weak similarity to Peroxisomal membrane protein 2 (22 kDa peroxisomal membrane protein) (Swiss-Prot:P42925) [Mus musculus] Length = 965 Score = 26.6 bits (56), Expect = 8.6 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +3 Query: 111 RKPAVRPLGNTRATLVFGDHRPRKSITSELRARIST 218 +KP +RP+ + V G+ R +S +S LR R S+ Sbjct: 113 QKPVLRPVPRIDKSAVSGEGRVTRSTSSGLRGRSSS 148 >At4g14310.1 68417.m02204 peroxisomal membrane protein-related contains weak similarity to Peroxisomal membrane protein 2 (22 kDa peroxisomal membrane protein) (Swiss-Prot:P42925) [Mus musculus] Length = 1087 Score = 26.6 bits (56), Expect = 8.6 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +3 Query: 111 RKPAVRPLGNTRATLVFGDHRPRKSITSELRARIST 218 +KP +RP+ + V G+ R +S +S LR R S+ Sbjct: 113 QKPVLRPVPRIDKSAVSGEGRVTRSTSSGLRGRSSS 148 >At3g42480.1 68416.m04405 hypothetical protein Length = 138 Score = 26.6 bits (56), Expect = 8.6 Identities = 16/60 (26%), Positives = 26/60 (43%) Frame = +2 Query: 107 VSQASGTSAGKYSCYACIRRPSSTKIDHV*TSSTNKYGSMGRSI*SSFFCEFHIIYIFYS 286 V A T G+ C+ + + T I HV S ++GS + E +I+ FY+ Sbjct: 56 VLDAFNTFKGENKCFTDVDIMAKTLIGHVSDSEPKRFGSYAELFHYEDYPECWLIHEFYN 115 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,083,278 Number of Sequences: 28952 Number of extensions: 171880 Number of successful extensions: 488 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 479 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 488 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 811731120 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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