Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G23
         (474 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    28   2.8  
At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636...    28   3.7  
At3g17850.1 68416.m02275 protein kinase, putative similar to IRE...    27   6.5  
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co...    27   8.6  
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co...    27   8.6  
At3g42480.1 68416.m04405 hypothetical protein                          27   8.6  

>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 230 GPSIRTYSCSKFRRDRFSWTMVAEYKRSTSISQRTYRWLATLRPI 96
           GP+++T  C   RR RF  T+V +   + S      RW     P+
Sbjct: 54  GPTLKTLPCGCRRRIRFRLTVVNQLSENLSRRGEGKRWFDKKLPL 98


>At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636:
           Uncharacterized ACR, COG1565
          Length = 471

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 2   HEAVSESLKWGNIGMNMGVMLVSQNCTREKAKSV 103
           H  +++S   G++G+N  V  + QNC  E+A+S+
Sbjct: 390 HGPMTQSQFLGSLGINFRVDALLQNCNDEQAESL 423


>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
            (incomplete root hair elongation) [Arabidopsis thaliana]
            gi|6729346|dbj|BAA89783; contains protein kinase domain
            Pfam:PF00069
          Length = 1296

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = -3

Query: 283  IKYINYMKFTKKGTLYRAAHRSVLIRARSSDVIDFRGRWSPNTSVARVFPSGRTAGLRHS 104
            +K   + K     TL R     V     + D   FR R+S NTS  + FPSG       +
Sbjct: 1165 VKQHIFFKDINWDTLARQKAAFVPASESAIDTSYFRSRYSWNTSDEQFFPSGEVPDYSDA 1224

Query: 103  D 101
            D
Sbjct: 1225 D 1225


>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
           contains weak similarity to Peroxisomal membrane protein
           2 (22 kDa peroxisomal membrane protein)
           (Swiss-Prot:P42925) [Mus musculus]
          Length = 965

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 111 RKPAVRPLGNTRATLVFGDHRPRKSITSELRARIST 218
           +KP +RP+     + V G+ R  +S +S LR R S+
Sbjct: 113 QKPVLRPVPRIDKSAVSGEGRVTRSTSSGLRGRSSS 148


>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
           contains weak similarity to Peroxisomal membrane protein
           2 (22 kDa peroxisomal membrane protein)
           (Swiss-Prot:P42925) [Mus musculus]
          Length = 1087

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 111 RKPAVRPLGNTRATLVFGDHRPRKSITSELRARIST 218
           +KP +RP+     + V G+ R  +S +S LR R S+
Sbjct: 113 QKPVLRPVPRIDKSAVSGEGRVTRSTSSGLRGRSSS 148


>At3g42480.1 68416.m04405 hypothetical protein
          Length = 138

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 107 VSQASGTSAGKYSCYACIRRPSSTKIDHV*TSSTNKYGSMGRSI*SSFFCEFHIIYIFYS 286
           V  A  T  G+  C+  +   + T I HV  S   ++GS         + E  +I+ FY+
Sbjct: 56  VLDAFNTFKGENKCFTDVDIMAKTLIGHVSDSEPKRFGSYAELFHYEDYPECWLIHEFYN 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,083,278
Number of Sequences: 28952
Number of extensions: 171880
Number of successful extensions: 488
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)