Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G22
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   237   3e-63
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   229   1e-60
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    34   0.073
At3g17900.1 68416.m02280 expressed protein                             28   4.8  
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea...    28   4.8  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   4.8  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   4.8  
At5g49660.1 68418.m06147 leucine-rich repeat transmembrane prote...    27   6.4  
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein       27   6.4  
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P...    27   8.4  
At1g35560.1 68414.m04415 TCP family transcription factor, putati...    27   8.4  
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    27   8.4  
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g...    27   8.4  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  237 bits (581), Expect = 3e-63
 Identities = 109/143 (76%), Positives = 124/143 (86%)
 Frame = +3

Query: 33  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
           MGK RG+   RK    R  QRWADK++KK+H+G  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
           QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 393 KVVKVANVSLLALYKEQKERPRS 461
           KVVKV+ VSLLAL+KE+KE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  229 bits (559), Expect = 1e-60
 Identities = 107/143 (74%), Positives = 121/143 (84%)
 Frame = +3

Query: 33  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
           MGK RG+   RK    R  QRWADK +KK++ G  WK  PF  +SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59

Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
           QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 393 KVVKVANVSLLALYKEQKERPRS 461
           KVVKV+ VSLLAL+KE+KE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 33.9 bits (74), Expect = 0.073
 Identities = 24/65 (36%), Positives = 38/65 (58%)
 Frame = +3

Query: 210 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 389
           K+PNSA RK  +V+L  N   + A +P +G  ++ +E+  VL+ G GR    V D PGV+
Sbjct: 43  KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94

Query: 390 FKVVK 404
              ++
Sbjct: 95  SHCIR 99


>At3g17900.1 68416.m02280 expressed protein
          Length = 838

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 242 NTLTNG*IRLLGFNANFFEDDALSMRCTTEGVRLPSR 132
           N   +G   LL F     E D  S+RC  EG+ +P R
Sbjct: 441 NGQKSGTEELLSFRGVALERDRFSVRCGLEGICIPGR 477


>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
            family protein similar to CPY (GI:3096961) {Chironomus
            thummi}; contains Pfam PF00400: WD domain, G-beta repeat
            (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
          Length = 2471

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 286  TNAVTFLPFLMSCTRTHLRMAEFGCLASTPTFSRTMPLA*DAPPKGFA 143
            +N  T   FL+  + TH+ + EFG   +T T+   +P A  +PP   A
Sbjct: 2161 SNHPTMPLFLVGSSNTHIYLWEFGNERATATYG-VLPAANVSPPYALA 2207


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 96  WADKEFKKAHMGTRWKANPFGGASHAKG 179
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 96  WADKEFKKAHMGTRWKANPFGGASHAKG 179
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


>At5g49660.1 68418.m06147 leucine-rich repeat transmembrane protein
           kinase, putative contains leucine rich repeat (LRR)
           domains, Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 966

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 499 SAAGHSLITM*TYDLGLSFCSLYRARSDTFATLTTLNLTPGMS 371
           S  G +L T   YD+G ++C+    R D    +T L+L+ G+S
Sbjct: 41  SLFGDALSTWNVYDVGTNYCNFTGVRCDGQGLVTDLDLS-GLS 82


>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
          Length = 356

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 349 PNPATNTSSFSSMWLRQP-SRGTNAVTFLPFLMSCTR 242
           P PA++T SFSS     P S     ++F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336


>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
           At1g25886, At4g03300
          Length = 1312

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 258 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 419
           K  KK +  VP+      + E D+V   GF  K   V D+P  + +VV +  NVS
Sbjct: 819 KEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873


>At1g35560.1 68414.m04415 TCP family transcription factor, putative
           similar to PCF2 (GI:2580440) and PCF1 (GI:2580438)
           [Oryza sativa]
          Length = 341

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 400 TTLNLTPGMSPTAWPLRPNPATNTSSFSSMWL 305
           +T + T  M P  W L P PA +T+  S+ W+
Sbjct: 212 STRSRTQNMIPPMWALAPTPA-STNGGSAFWM 242


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 406 TLTTLNLTPGMSPTAWP 356
           T TT+N +PG  P +WP
Sbjct: 587 TKTTINTSPGKLPVSWP 603


>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
           P-glycoprotein GI:4204793 from [Solanum tuberosum]
          Length = 1227

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 24/79 (30%), Positives = 31/79 (39%)
 Frame = -3

Query: 409 ATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHLR 230
           A    LN TP +  +  PL   P T T+S     + QP     A   +  L S  R   +
Sbjct: 601 AASPNLNHTPSLPVSTKPLPELPITETTSSIHQSVNQPDTTKQAKVTVGRLYSMIRPDWK 660

Query: 229 MAEFGCLASTPTFSRTMPL 173
               G L S    S+ MPL
Sbjct: 661 YGLCGTLGSFIAGSQ-MPL 678


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,143,018
Number of Sequences: 28952
Number of extensions: 284322
Number of successful extensions: 754
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)