Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G21
         (437 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CUV1 Cluster: Putative uncharacterized protein; n=2; ...    33   3.5  
UniRef50_Q1ZHR7 Cluster: Type IV pilin biogenesis protein, putat...    32   4.7  
UniRef50_A3DJQ4 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  
UniRef50_Q8IM68 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  
UniRef50_A2F5C7 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  

>UniRef50_Q5CUV1 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 652

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -1

Query: 257 RLVYINLFTINSQHSIVKSNLILN*LDNIRETFKFIKTYSTFNARDD--YCECKYENSCD 84
           R+ YIN  TIN        NL  + + NI +   +I    ++  R D  Y E +YENS  
Sbjct: 569 RISYINFSTIN-----YLDNLNPDIMQNIEQDLGYIALSPSYKQRLDIEYSETEYENSPY 623

Query: 83  RQINRASYIIINVLSGKL 30
           ++ +R    +IN  S  L
Sbjct: 624 KEFDRIKNDVINTPSTNL 641


>UniRef50_Q1ZHR7 Cluster: Type IV pilin biogenesis protein,
           putative; n=1; Psychromonas sp. CNPT3|Rep: Type IV pilin
           biogenesis protein, putative - Psychromonas sp. CNPT3
          Length = 1116

 Score = 32.3 bits (70), Expect = 4.7
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 134 FNARDDYCECKYENSCDRQINRASYIIINVLSGKLI 27
           ++ + D C+   +NSC+    RA Y I+N L+GKLI
Sbjct: 766 YDPQKDTCQRTKDNSCEDSQGRAIY-IVNALTGKLI 800


>UniRef50_A3DJQ4 Cluster: Putative uncharacterized protein; n=1;
           Clostridium thermocellum ATCC 27405|Rep: Putative
           uncharacterized protein - Clostridium thermocellum
           (strain ATCC 27405 / DSM 1237)
          Length = 130

 Score = 31.9 bits (69), Expect = 6.2
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 248 YINLFTINSQHSIVKSNLILN*LDNIRETFKFIKTYSTFNAR-DDYCECKYENSCDRQIN 72
           YINL   N+    +++N ILN +D I ET + I  Y   N   ++Y     EN  D    
Sbjct: 18  YINLVYDNNGIKEIQANSILNIIDEI-ETNRLINVYEALNTLIENYSLVILENDIDIVSA 76

Query: 71  RASYIII 51
              Y+II
Sbjct: 77  EFCYLII 83


>UniRef50_Q8IM68 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 879

 Score = 31.9 bits (69), Expect = 6.2
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 170 RETFKFIKTYSTFNARDDYCECKYENSCDRQINRASYIIINVLSGKL 30
           R+ F   KTY  + +  + C C Y N  +++I++  ++I N+ +  L
Sbjct: 404 RQVFNECKTYHMYISFHNLCICGYYNKYNKEISQTKWLINNISNSVL 450


>UniRef50_A2F5C7 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 199

 Score = 31.9 bits (69), Expect = 6.2
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -1

Query: 257 RLVYINLFTINSQHSIVKSNLILN*LDNIRETFKFIKTYSTFNARDDYCECKYENSCDRQ 78
           RL +     ++S  +I K N+  N +D I+  +K    Y   +   D C  K  NSC   
Sbjct: 92  RLAFNPAIYLSSLQAIWKLNIESNEIDTIQNKYKCCGFYKINDISSDDCPFKKPNSCYFA 151

Query: 77  INR 69
           IN+
Sbjct: 152 INK 154


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 344,863,429
Number of Sequences: 1657284
Number of extensions: 5749923
Number of successful extensions: 12965
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12965
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)