Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G21
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    25   3.9  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    24   8.9  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = +1

Query: 208 TIECCELIVNKLMYTSRDAGTVYVCYVTPSRHIYSTDPHKMLNTFC 345
           T ECC      L + +   GTV +      + +Y    H   N FC
Sbjct: 155 TNECCWSFSEDLFFMTTGLGTVQIMEWPSLKRVYDIKAHNS-NCFC 199


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = -1

Query: 269 VPASRLVYINLFTINSQHSIVKSNLILN*LDNIRETFKFIKTYSTFNARDDYCECKYENS 90
           VP +  V  +  T N   S    + +++ L +  +   F     T+   ++  E  YE++
Sbjct: 322 VPMNEKVSEDRITTNQSRSGNDESSLVDFLTSKSDNSSFNFPSDTYEGTENILETAYEST 381

Query: 89  CDRQIN 72
             RQ+N
Sbjct: 382 TARQVN 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,545,093
Number of Sequences: 5004
Number of extensions: 27366
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)