Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G21
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0051 - 862286-864670                                             28   3.8  

>09_01_0051 - 862286-864670
          Length = 794

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 202 DLTIECCELIVNKLMYTSRDAGTVYVCYVTPSRHIYSTDP--HKMLNTFCQRYRK 360
           D+T  CC L++N L +       V +     S+ I  + P  +++L   C  YR+
Sbjct: 708 DITPACCALLINYLCWDRNLNAAVDIMLYALSKSIILSQPVGNRLLRWLCICYRR 762


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,470,625
Number of Sequences: 37544
Number of extensions: 134691
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)