Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G21
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)                      27   5.1  
SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_28131| Best HMM Match : Peptidase_C1 (HMM E-Value=1.2e-40)          27   8.9  

>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 880

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 366 WTFSVSLTKGIQHFMRIS*VDMT*RRNITYINC 268
           WT  ++L   IQ+F   +    + + N TYINC
Sbjct: 762 WTSIITLRNAIQNFQPKTTFAKSAKTNFTYINC 794


>SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 420 VDFCQSIQVVRSHYVNTIWTFSVSLTKGIQHFMR 319
           VDFCQ + V  +    T+W +   L + +Q+  R
Sbjct: 13  VDFCQIVVVNTTSSSQTLWAYRNELKRALQNVER 46


>SB_28131| Best HMM Match : Peptidase_C1 (HMM E-Value=1.2e-40)
          Length = 295

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 149 KTYSTFNARDDYCECKYENSCD 84
           +TY  + A++ YC C   + CD
Sbjct: 96  RTYGRYLAQEGYCHCAKTDKCD 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,824,712
Number of Sequences: 59808
Number of extensions: 187694
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)