Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G21
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13480.1 68416.m01696 expressed protein ; expression supporte...    30   0.79 
At2g04135.1 68415.m00397 hypothetical protein                          28   3.2  
At1g41830.1 68414.m04829 multi-copper oxidase type I family prot...    27   4.2  
At3g29470.1 68416.m03701 hypothetical protein                          27   7.3  
At2g28390.1 68415.m03450 SAND family protein similar to Sand (GI...    27   7.3  

>At3g13480.1 68416.m01696 expressed protein ; expression supported
           by MPSS
          Length = 205

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 274 YVCYVTPSRHIYSTDPHKMLNTFCQ 348
           ++C+  PS HIY++   K+ NTF Q
Sbjct: 13  FICFCKPSPHIYASGSLKLENTFPQ 37


>At2g04135.1 68415.m00397 hypothetical protein
          Length = 285

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 179 DNIRETFKFIKTYSTFNARDDYCECKYENSCDRQINRASY 60
           + I + +K  KT+STF+A +   + +Y ++   + N  SY
Sbjct: 131 EKITDAYKLEKTFSTFHANNIVLQTQYRSAPFPEANVTSY 170


>At1g41830.1 68414.m04829 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 542

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 218 HSIVKSNLILN*LDNIRETFKFIKTYSTFNARDDYCECKYENSC 87
           HS+   NLI+N  +++ E F  I      N R+ Y +  Y  +C
Sbjct: 62  HSVTNDNLIINVHNSLDEPF-LISWNGVQNRRNSYVDGMYGTTC 104


>At3g29470.1 68416.m03701 hypothetical protein
          Length = 174

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 179 DNIRETFKFIKTYSTFNARDDYCECKYENSCDRQINRASY 60
           + I E  K  KT+STF+A +   + +Y ++   + N  SY
Sbjct: 47  EKITEADKLEKTFSTFHANNIVLQTQYRSAPFPEANVTSY 86


>At2g28390.1 68415.m03450 SAND family protein similar to Sand
           (GI:3928166) [Takifugu rubripes]; contains Pfam PF03164:
           SAND family protein
          Length = 607

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
 Frame = +1

Query: 256 RDAGTVYVCYVTPSRHIYST-DP-------HKMLNTFCQRYRKGPNRIYI 381
           RD     +C+VTP   +Y+  DP        K+ N  CQR +   N +++
Sbjct: 550 RDENYTLLCWVTPDFELYAAFDPLADKAMAIKICNQVCQRVKDVENEVFL 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,416,179
Number of Sequences: 28952
Number of extensions: 124894
Number of successful extensions: 283
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)