Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G20
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    23   5.4  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          23   5.4  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    23   5.4  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    23   5.4  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    23   7.2  

>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 154 RVNISS-SSHFFM*NLERLFIPLS 86
           R NI S   HFF+    RL++P S
Sbjct: 338 RANICSFKQHFFLSPFSRLYVPRS 361


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 132 HISSCKTLKDCSFHFLVT 79
           +I S +TLK C F FL T
Sbjct: 26  NILSARTLKICRFRFLPT 43


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 154 RVNISS-SSHFFM*NLERLFIPLS 86
           R NI S   HFF+    RL++P S
Sbjct: 338 RANICSFKQHFFLSPFSRLYVPRS 361


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 126 SSCKTLKDCSFHFLV 82
           SSC ++K CS H  +
Sbjct: 405 SSCNSMKQCSLHLFL 419


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 132 HISSCKTLKDCSFHF 88
           HI   K+L+DCS +F
Sbjct: 155 HIQKLKSLRDCSGNF 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 517,025
Number of Sequences: 5004
Number of extensions: 5648
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)