Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G18
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         66   2e-11
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         31   0.68 
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          28   3.6  
SB_30423| Best HMM Match : Filament (HMM E-Value=3.3)                  28   3.6  
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)               27   6.4  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 32/42 (76%), Positives = 35/42 (83%)
 Frame = +2

Query: 368 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAK 493
           MRGAFGKPQGTVARV IGQ I+S+R+ D  KA  IEALRRAK
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAK 42


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 218 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 337
           L    I C  Y  KN  +D   +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +2

Query: 53  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 232
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 233 IC 238
           +C
Sbjct: 500 MC 501


>SB_30423| Best HMM Match : Filament (HMM E-Value=3.3)
          Length = 355

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 471 MTCAFQRSLERTDIMGCPIRTRATVPWGFPN 379
           M C+ + SL   D  GC  +TR+ VP G+P+
Sbjct: 36  MPCSRRSSLSTLD-RGCSDKTRSPVPQGYPD 65


>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
          Length = 1508

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = -3

Query: 245  CC--NRYGLLPAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLG--QAHPDKTEI* 78
            CC  N  G L + ++ A    +  S   + SH    + C  R Y S+G  Q+H D   + 
Sbjct: 1017 CCRVNSVGRLQSHEDGATVCCRVYSVGRLQSHEDGATVC-CRVY-SVGRLQSHEDGATVC 1074

Query: 77   DTVYSYNIDNISLVGAPLC 21
              VYS N   + +V + +C
Sbjct: 1075 WRVYSVNFSRMKMVRSSVC 1093


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,627,946
Number of Sequences: 59808
Number of extensions: 400007
Number of successful extensions: 1203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)