Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G17
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   1.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   4.4  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    24   7.8  

>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 162 LLNIIVACNFDSLHSSRTSGVCVCKTFLAI 73
           +L  +V  +FD+LHSS   G+ +   +L I
Sbjct: 413 VLTGVVNLSFDTLHSSNAKGLTIMTMYLFI 442


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 49  TNPSLDSIYCQKCFTNTNST 108
           TNP L+S  C K   N NS+
Sbjct: 171 TNPLLESFGCAKTLRNNNSS 190


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 58  SLDSIYCQKCFTNTNSTSA 114
           +L ++YCQ  F+NT+  SA
Sbjct: 594 ALQAMYCQLIFSNTSVPSA 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,245,059
Number of Sequences: 5004
Number of extensions: 19701
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)