Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G17
         (347 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43628| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.59 
SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   0.59 
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.59 
SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   3.2  

>SB_43628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 79  QKCFTNTNSTSA*TVERVKVTRNYYI 156
           QK F NTN+ S  +VE +K+TR  ++
Sbjct: 215 QKRFQNTNNNSNVSVEEIKITRTLFV 240


>SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 365

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 16  VSSFFFFFLKTTNPSLDSIYCQKCFTN 96
           V +FFF ++  T+ SL S++C KC+ N
Sbjct: 260 VCTFFFCWMPFTSFSLVSMFCTKCYYN 286


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 111 CVNCGESQSYTQLLYLIIIKCTTTYYLP 194
           C N    ++Y Q+LY  +I+ TT+  LP
Sbjct: 349 CTNVNRQENYLQVLYCTVIRTTTSSKLP 376


>SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 842

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 94  NTNSTSA*TVERVKVTRNYYI 156
           NTNS S  TV+ VKVTR  ++
Sbjct: 222 NTNSISGPTVQNVKVTRTLFL 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,368,401
Number of Sequences: 59808
Number of extensions: 124283
Number of successful extensions: 229
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)