Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G17
         (347 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533536-1|CAG38567.1|  492|Homo sapiens FLJ10315 protein.             28   9.3  
CR457311-1|CAG33592.1|  492|Homo sapiens FLJ10315 protein.             28   9.3  
BC004364-1|AAH04364.1|  234|Homo sapiens TMEM39B protein protein.      28   9.3  
AL445248-4|CAH71947.1|  492|Homo sapiens transmembrane protein 3...    28   9.3  
AK023331-1|BAB14530.1|  492|Homo sapiens protein ( Homo sapiens ...    28   9.3  
AK001177-1|BAA91535.1|  365|Homo sapiens protein ( Homo sapiens ...    28   9.3  

>CR533536-1|CAG38567.1|  492|Homo sapiens FLJ10315 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +2

Query: 26  FFFFF*KQ-QILHWTLFIARNVL--QTQTPLVRELWRESKLHATIIFNNY*MYYNLL 187
           F FFF K  +IL+  L +   V+  Q  + +  E W ++   A I+F+NY  ++ LL
Sbjct: 411 FHFFFSKPLRILNILLLLEGAVIVYQLYSLMSSEKWHQTISLALILFSNYYAFFKLL 467


>CR457311-1|CAG33592.1|  492|Homo sapiens FLJ10315 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +2

Query: 26  FFFFF*KQ-QILHWTLFIARNVL--QTQTPLVRELWRESKLHATIIFNNY*MYYNLL 187
           F FFF K  +IL+  L +   V+  Q  + +  E W ++   A I+F+NY  ++ LL
Sbjct: 411 FHFFFSKPLRILNILLLLEGAVIVYQLYSLMSSEKWHQTISLALILFSNYYAFFKLL 467


>BC004364-1|AAH04364.1|  234|Homo sapiens TMEM39B protein protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +2

Query: 26  FFFFF*KQ-QILHWTLFIARNVL--QTQTPLVRELWRESKLHATIIFNNY*MYYNLL 187
           F FFF K  +IL+  L +   V+  Q  + +  E W ++   A I+F+NY  ++ LL
Sbjct: 153 FHFFFSKPLRILNILLLLEGAVIVYQLYSLMSSEKWHQTISLALILFSNYYAFFKLL 209


>AL445248-4|CAH71947.1|  492|Homo sapiens transmembrane protein 39B
           protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +2

Query: 26  FFFFF*KQ-QILHWTLFIARNVL--QTQTPLVRELWRESKLHATIIFNNY*MYYNLL 187
           F FFF K  +IL+  L +   V+  Q  + +  E W ++   A I+F+NY  ++ LL
Sbjct: 411 FHFFFSKPLRILNILLLLEGAVIVYQLYSLMSSEKWHQTISLALILFSNYYAFFKLL 467


>AK023331-1|BAB14530.1|  492|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13269 fis, clone OVARC1000984. ).
          Length = 492

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +2

Query: 26  FFFFF*KQ-QILHWTLFIARNVL--QTQTPLVRELWRESKLHATIIFNNY*MYYNLL 187
           F FFF K  +IL+  L +   V+  Q  + +  E W ++   A I+F+NY  ++ LL
Sbjct: 411 FHFFFSKPLRILNILLLLEGAVIVYQLYSLMSSEKWHQTISLALILFSNYYAFFKLL 467


>AK001177-1|BAA91535.1|  365|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10315 fis, clone NT2RM2000395. ).
          Length = 365

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +2

Query: 26  FFFFF*KQ-QILHWTLFIARNVL--QTQTPLVRELWRESKLHATIIFNNY*MYYNLL 187
           F FFF K  +IL+  L +   V+  Q  + +  E W ++   A I+F+NY  ++ LL
Sbjct: 284 FHFFFSKPLRILNILLLLEGAVIVYQLYSLMSSEKWHQTISLALILFSNYYAFFKLL 340


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,671,455
Number of Sequences: 237096
Number of extensions: 597130
Number of successful extensions: 866
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)