Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G17
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016449-7|AAG24000.2|  350|Caenorhabditis elegans Hypothetical ...    30   0.52 
U00049-5|AAM22032.1|  195|Caenorhabditis elegans Hypothetical pr...    29   0.91 
Z83109-6|CAB05522.1|  362|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z83106-2|CAB05494.1|  321|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z83239-3|CAB05810.1|  344|Caenorhabditis elegans Hypothetical pr...    27   3.7  

>AF016449-7|AAG24000.2|  350|Caenorhabditis elegans Hypothetical
           protein C50H11.13 protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 114 VNCGESQSYT-QLLYLIIIKCTTTYYLP 194
           + CGE   Y+ Q   +I+++C TT++LP
Sbjct: 182 IYCGEDPRYSSQTRIIIVLECLTTFFLP 209


>U00049-5|AAM22032.1|  195|Caenorhabditis elegans Hypothetical
           protein C18F10.9 protein.
          Length = 195

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = +3

Query: 150 LYLIIIKCTTTYYLPKFEKXXXXXXXXNLKNVSRKFFILQIFILLRNTVLFVKKKM*YFV 329
           L LI   C T   L KF           LKNVSRK  + +I     NT L V K+     
Sbjct: 67  LSLISEICVTPAEL-KFPMATTNQKTITLKNVSRKRMMFKIKSSSTNTYLKVSKRYSLIT 125

Query: 330 YLTFEV 347
           + +F +
Sbjct: 126 FSSFRI 131


>Z83109-6|CAB05522.1|  362|Caenorhabditis elegans Hypothetical
           protein F44G3.11 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
 Frame = +3

Query: 153 YLIIIKCTTTYYLPKFEKXXXXXXXXNLKNVSRKFF---ILQIF---ILLRNTVLFV 305
           Y III C T  YL   EK        +++N+ R+F+   ++QIF   I L + ++F+
Sbjct: 237 YTIIIYCATIMYLKMEEK--LKLLSVSIRNLHRQFYKTLVIQIFTPTICLFSPLIFI 291


>Z83106-2|CAB05494.1|  321|Caenorhabditis elegans Hypothetical
           protein F22B8.3 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = +3

Query: 153 YLIIIKCTTTYYLPKFEKXXXXXXXXNLKNVSRKFF---ILQIF---ILLRNTVLFV 305
           Y III C T  YL   EK         ++N+ R+F+   ++QIF   I L + ++F+
Sbjct: 221 YTIIIYCATIMYLKMEEKLKLLSFA--IRNLHRQFYKTLVIQIFTPTIFLFSPLIFI 275


>Z83239-3|CAB05810.1|  344|Caenorhabditis elegans Hypothetical
           protein T09F5.3 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 153 YLIIIKCTTTYYLPKFEKXXXXXXXXNLKNVSRKFFILQIFILLRNTVLFV 305
           YLIII C    +L +  K        N +N+ ++FF   +F  L  T+LFV
Sbjct: 211 YLIIIFCGIRMHL-RMGKELKQFSVTN-RNLQKQFFKALVFQTLAPTLLFV 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,755,599
Number of Sequences: 27780
Number of extensions: 109690
Number of successful extensions: 225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)