Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G17
         (347 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06440.1 68416.m00745 galactosyltransferase family protein co...    29   1.1  
At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR...    27   3.4  

>At3g06440.1 68416.m00745 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 619

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 89  LQTQTPLVRELWRESKLHATIIFNNY*MYYNLL 187
           L T   +  E+WRESK +  I F  +  YY LL
Sbjct: 413 LHTNEKVNLEMWRESKAYGDIQFMPFVDYYGLL 445


>At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1109

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +2

Query: 2   HEGELSRVFFFFF*KQQILHW-TLFIARNVLQTQT--PLVRELWRESKLHATIIFNNY 166
           H  ++ + F   F KQ I +  T+F  + ++++QT  P + +  RESK+   I+  NY
Sbjct: 19  HGPDVRKSFLSHFRKQFICNGITMFDDQKIVRSQTIAPSLTQGIRESKISIVILSKNY 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,957,875
Number of Sequences: 28952
Number of extensions: 86903
Number of successful extensions: 142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)