BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_G16 (383 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_56628| Best HMM Match : Actin (HMM E-Value=0) 200 2e-52 SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 196 5e-51 SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 196 5e-51 SB_56| Best HMM Match : Actin (HMM E-Value=0) 194 2e-50 SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 193 4e-50 SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 5e-47 SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 2e-18 SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 8e-10 SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 8e-10 SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 55 2e-08 SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 48 3e-06 SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 43 1e-04 SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 5e-04 SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.24 SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.24 SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.56 SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0) 28 2.3 SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3 SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3 SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3 SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034) 27 4.0 SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 5.2 SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19) 27 5.2 SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9 SB_3368| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9 SB_14023| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9 SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6) 26 9.2 SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2 SB_14615| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2 SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 26 9.2 SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3) 26 9.2 SB_21813| Best HMM Match : CutA1 (HMM E-Value=8.3) 26 9.2 >SB_56628| Best HMM Match : Actin (HMM E-Value=0) Length = 376 Score = 200 bits (489), Expect = 2e-52 Identities = 89/91 (97%), Positives = 91/91 (100%) Frame = +1 Query: 109 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 288 MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60 Query: 289 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 381 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91 >SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 376 Score = 196 bits (478), Expect = 5e-51 Identities = 88/91 (96%), Positives = 90/91 (98%) Frame = +1 Query: 109 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 288 M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60 Query: 289 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 381 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91 >SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 349 Score = 196 bits (478), Expect = 5e-51 Identities = 86/91 (94%), Positives = 90/91 (98%) Frame = +1 Query: 109 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 288 M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60 Query: 289 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 381 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91 >SB_56| Best HMM Match : Actin (HMM E-Value=0) Length = 375 Score = 194 bits (474), Expect = 2e-50 Identities = 87/89 (97%), Positives = 89/89 (100%) Frame = +1 Query: 115 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 294 ++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61 Query: 295 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 381 RGILTLKYPIEHGIVTNWDDMEKIWHHTF Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 90 >SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 375 Score = 193 bits (471), Expect = 4e-50 Identities = 86/89 (96%), Positives = 89/89 (100%) Frame = +1 Query: 115 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 294 +++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61 Query: 295 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 381 RGILTLKYPIEHGIVTNWDDMEKIWHHTF Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 90 >SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 338 Score = 183 bits (445), Expect = 5e-47 Identities = 83/89 (93%), Positives = 86/89 (96%) Frame = +1 Query: 115 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 294 D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61 Query: 295 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 381 RGILTLKYPIEHGIVTNWDDMEKI TF Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90 >SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 411 Score = 88.6 bits (210), Expect = 2e-18 Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%) Frame = +1 Query: 127 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 300 + +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66 Query: 301 ILTLKYPIEHGIVTNWDDMEKIWHHTF 381 +L + YP+++GIV NWDDM+ +W +TF Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTF 93 >SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) Length = 1392 Score = 59.7 bits (138), Expect = 8e-10 Identities = 27/39 (69%), Positives = 29/39 (74%) Frame = +1 Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 234 E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392 >SB_54| Best HMM Match : Actin (HMM E-Value=0) Length = 2486 Score = 59.7 bits (138), Expect = 8e-10 Identities = 23/34 (67%), Positives = 30/34 (88%) Frame = +1 Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 234 +V+DNGSG CKAG + D++PR VFP+IVGRPRH+ Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130 >SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) Length = 921 Score = 55.2 bits (127), Expect = 2e-08 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%) Frame = +1 Query: 130 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYVGDEAQSKRG 300 A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD GD A +K G Sbjct: 702 AIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKYGDAAVAKSG 761 Query: 301 ILTL 312 ++ L Sbjct: 762 VMHL 765 >SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) Length = 580 Score = 48.0 bits (109), Expect = 3e-06 Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 2/89 (2%) Frame = +1 Query: 121 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 300 ++A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + + Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKD 283 Query: 301 ILTLKY--PIEHGIVTNWDDMEKIWHHTF 381 L Y P + G + NWD ++IW +TF Sbjct: 284 YSALFYVLPFQKGFLVNWDVEKQIWDYTF 312 >SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) Length = 372 Score = 42.7 bits (96), Expect = 1e-04 Identities = 19/41 (46%), Positives = 25/41 (60%) Frame = +1 Query: 247 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIW 369 G+ D ++GDEA K T K+PI H IV +WD ME+ W Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFW 317 >SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 198 Score = 40.3 bits (90), Expect = 5e-04 Identities = 18/39 (46%), Positives = 27/39 (69%) Frame = -3 Query: 231 VTRSPHDRGKYGAGSVVSRETGFAHSGPIVYDQRGNFLV 115 + RS D G+ G+GS+VS ETG AH+G I+ +Q + +V Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39 >SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 120 Score = 31.5 bits (68), Expect = 0.24 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = -1 Query: 206 GNTARGASSPAKPALHIPDPLSTT 135 GNT R PAKPAL++P P S T Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103 >SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) Length = 170 Score = 31.5 bits (68), Expect = 0.24 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = -1 Query: 206 GNTARGASSPAKPALHIPDPLSTT 135 GNT R PAKPAL++P P S T Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103 >SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 749 Score = 30.3 bits (65), Expect = 0.56 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -1 Query: 206 GNTARGASSPAKPALHIPDPLSTT 135 GNT R PAKP+L++P P S T Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563 >SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0) Length = 709 Score = 28.3 bits (60), Expect = 2.3 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +3 Query: 225 SSPGRHGRHGSEGLLRR**GTEQEGYPHTQIPHRTRHRH 341 S G HGR G+EG L R EQ + TRH H Sbjct: 134 SCGGIHGREGTEGKLNRNRKPEQGTGKRNMMLAETRHTH 172 >SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 130 Score = 28.3 bits (60), Expect = 2.3 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -1 Query: 206 GNTARGASSPAKPALHIPDPLSTT 135 GNT R AKPAL++P P S T Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63 >SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 635 Score = 28.3 bits (60), Expect = 2.3 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -1 Query: 206 GNTARGASSPAKPALHIPDPLSTT 135 GNT R PAKP L IP P + T Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91 >SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 824 Score = 28.3 bits (60), Expect = 2.3 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -3 Query: 363 LLHIVPVGDDAVFDGVFECEDTPLALCLITYVGVLLT 253 LL +VP D + + + E ED L CL +GV T Sbjct: 310 LLKLVPNLDTCIEESLTESEDVELGRCLYNNIGVQCT 346 >SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034) Length = 629 Score = 27.5 bits (58), Expect = 4.0 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Frame = +2 Query: 2 HEGELEL*RCAALPRLYNSKLIYLFNRTI*LKTNSQCATRKLPRWS*TMGPECAKPVSR- 178 H EL++ +LP I+ N + S R++PR S M P A+PVS+ Sbjct: 258 HMKELDMSPAKSLPSPQMQN-IHFSNSSPAKVIRSPPQAREVPRLSHQMSP-AAEPVSQL 315 Query: 179 ETTLPAPYFPRSWGDLVTR 235 +++P+P P+ G V+R Sbjct: 316 MSSIPSPGMPQGAGHGVSR 334 >SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) Length = 766 Score = 27.1 bits (57), Expect = 5.2 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +1 Query: 127 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 231 + +++D GS KAGFA ++A + + S++G H Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516 >SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19) Length = 769 Score = 27.1 bits (57), Expect = 5.2 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -3 Query: 366 DLLHIVPVGDDAVFDGVFECEDTPLALCLITYVGVLL 256 D L +PVG DA FDG + DT +C T + ++ Sbjct: 320 DALSRLPVGPDAQFDGKEDSADTD-CICTKTVLATVM 355 >SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1287 Score = 26.6 bits (56), Expect = 6.9 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = +2 Query: 143 TMGPECAKPVSRETTLPAPYFPRSW 217 T GP A+ S+E P P+F W Sbjct: 382 TQGPSVARQNSKEDVTPRPWFLEMW 406 >SB_3368| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 477 Score = 26.6 bits (56), Expect = 6.9 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 300 YPHTQIPHRTRHRHQLGRYGEDLASHLL 383 Y H Q+P+ TR H RY + ++ H L Sbjct: 41 YKHAQVPNSTRTLHL--RYSQQISPHFL 66 >SB_14023| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 283 Score = 26.6 bits (56), Expect = 6.9 Identities = 10/31 (32%), Positives = 14/31 (45%) Frame = +2 Query: 176 RETTLPAPYFPRSWGDLVTRASWSAWVRRTP 268 RE +P +W SW+AWV + P Sbjct: 252 REQPIPQQVDVSTWNKPFCNRSWTAWVEKKP 282 >SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6) Length = 184 Score = 26.2 bits (55), Expect = 9.2 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%) Frame = -1 Query: 227 RGRPTIE----GNTARGASSPAKPALHIPDPLSTTNAATSSS 114 RG P I NT+RG PA P + PL+ +S+S Sbjct: 119 RGTPPIREDGYANTSRGDRGPASPHSFLSSPLNLRKQPSSAS 160 >SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 285 Score = 26.2 bits (55), Expect = 9.2 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -1 Query: 212 IEGNTARGASSPAKPALHIPDPLSTTNAATSSSH 111 IE + A++P P + +P + +AAT +SH Sbjct: 225 IERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258 >SB_14615| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 185 Score = 26.2 bits (55), Expect = 9.2 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -1 Query: 209 EGNTARGASSP-AKPALHIPDPLSTTNAATSS 117 +G T R SS A+P L++P P S T ++ SS Sbjct: 79 DGGTNRTRSSASAEPTLNLPSPPSKTPSSASS 110 >SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) Length = 1249 Score = 26.2 bits (55), Expect = 9.2 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = -1 Query: 254 PMPTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSSHIVN*F 96 P PT TP + RP S+ A P LHIP+ S + +VN F Sbjct: 741 PPPTRTPSGKDRPH---------STTATPTLHIPERTRRNKKPKSRAEVVNWF 784 >SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3) Length = 171 Score = 26.2 bits (55), Expect = 9.2 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -1 Query: 209 EGNTARGASSP-AKPALHIPDPLSTTNAATSS 117 +G T R SS A+P L++P P S T ++ SS Sbjct: 79 DGGTNRTRSSASAEPTLNLPSPPSKTPSSASS 110 >SB_21813| Best HMM Match : CutA1 (HMM E-Value=8.3) Length = 200 Score = 26.2 bits (55), Expect = 9.2 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -1 Query: 209 EGNTARGASSP-AKPALHIPDPLSTTNAATSS 117 +G T R SS A+P L++P P S T ++ SS Sbjct: 79 DGGTNRTRSSASAEPTLNLPSPPSKTPSSASS 110 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,431,150 Number of Sequences: 59808 Number of extensions: 263057 Number of successful extensions: 714 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 639 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 712 length of database: 16,821,457 effective HSP length: 74 effective length of database: 12,395,665 effective search space used: 656970245 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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