SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G16
         (383 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56628| Best HMM Match : Actin (HMM E-Value=0)                      200   2e-52
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)             196   5e-51
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)              196   5e-51
SB_56| Best HMM Match : Actin (HMM E-Value=0)                         194   2e-50
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)              193   4e-50
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)             183   5e-47
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   2e-18
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  60   8e-10
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          60   8e-10
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 55   2e-08
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)                  48   3e-06
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)               43   1e-04
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   5e-04
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.24 
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)                    31   0.24 
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.56 
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)                     28   2.3  
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034)         27   4.0  
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)                  27   5.2  
SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19)                 27   5.2  
SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_3368| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_14023| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6)                   26   9.2  
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_14615| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   26   9.2  
SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3)                     26   9.2  
SB_21813| Best HMM Match : CutA1 (HMM E-Value=8.3)                     26   9.2  

>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score =  200 bits (489), Expect = 2e-52
 Identities = 89/91 (97%), Positives = 91/91 (100%)
 Frame = +1

Query: 109 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 288
           MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1   MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60

Query: 289 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 381
           SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF
Sbjct: 61  SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score =  196 bits (478), Expect = 5e-51
 Identities = 88/91 (96%), Positives = 90/91 (98%)
 Frame = +1

Query: 109 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 288
           M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1   MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60

Query: 289 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 381
           SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF
Sbjct: 61  SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91


>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  196 bits (478), Expect = 5e-51
 Identities = 86/91 (94%), Positives = 90/91 (98%)
 Frame = +1

Query: 109 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 288
           M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1   MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60

Query: 289 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 381
           SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF
Sbjct: 61  SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score =  194 bits (474), Expect = 2e-50
 Identities = 87/89 (97%), Positives = 89/89 (100%)
 Frame = +1

Query: 115 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 294
           ++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2   EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61

Query: 295 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 381
           RGILTLKYPIEHGIVTNWDDMEKIWHHTF
Sbjct: 62  RGILTLKYPIEHGIVTNWDDMEKIWHHTF 90


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  193 bits (471), Expect = 4e-50
 Identities = 86/89 (96%), Positives = 89/89 (100%)
 Frame = +1

Query: 115 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 294
           +++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2   EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61

Query: 295 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 381
           RGILTLKYPIEHGIVTNWDDMEKIWHHTF
Sbjct: 62  RGILTLKYPIEHGIVTNWDDMEKIWHHTF 90


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score =  183 bits (445), Expect = 5e-47
 Identities = 83/89 (93%), Positives = 86/89 (96%)
 Frame = +1

Query: 115 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 294
           D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2   DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61

Query: 295 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 381
           RGILTLKYPIEHGIVTNWDDMEKI   TF
Sbjct: 62  RGILTLKYPIEHGIVTNWDDMEKIMFETF 90


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
 Frame = +1

Query: 127 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 300
           + +V DNG+G  K G+AG + P  +FPS+VGRP  R    +  +  KD  VGDEA   R 
Sbjct: 7   SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66

Query: 301 ILTLKYPIEHGIVTNWDDMEKIWHHTF 381
           +L + YP+++GIV NWDDM+ +W +TF
Sbjct: 67  MLEVNYPMDNGIVRNWDDMKHVWDYTF 93


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 59.7 bits (138), Expect = 8e-10
 Identities = 27/39 (69%), Positives = 29/39 (74%)
 Frame = +1

Query: 118  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 234
            E    LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 59.7 bits (138), Expect = 8e-10
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = +1

Query: 133  LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 234
            +V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
 Frame = +1

Query: 130 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYVGDEAQSKRG 300
           A+V+DNG G+ K GFAGD  PR + P++VG P+   +++G  +  KD    GD A +K G
Sbjct: 702 AIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKYGDAAVAKSG 761

Query: 301 ILTL 312
           ++ L
Sbjct: 762 VMHL 765


>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
          Length = 580

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
 Frame = +1

Query: 121 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 300
           ++A LV+D G+   K GFA + APR++ P+ + + + +       ++  ++GD+ +  + 
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKD 283

Query: 301 ILTLKY--PIEHGIVTNWDDMEKIWHHTF 381
              L Y  P + G + NWD  ++IW +TF
Sbjct: 284 YSALFYVLPFQKGFLVNWDVEKQIWDYTF 312


>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
          Length = 372

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = +1

Query: 247 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIW 369
           G+   D ++GDEA  K    T K+PI H IV +WD ME+ W
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFW 317


>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 18/39 (46%), Positives = 27/39 (69%)
 Frame = -3

Query: 231 VTRSPHDRGKYGAGSVVSRETGFAHSGPIVYDQRGNFLV 115
           + RS  D G+ G+GS+VS ETG AH+G I+ +Q  + +V
Sbjct: 1   MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39


>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -1

Query: 206 GNTARGASSPAKPALHIPDPLSTT 135
           GNT R    PAKPAL++P P S T
Sbjct: 80  GNTNRRTRIPAKPALNLPSPPSKT 103


>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
          Length = 170

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -1

Query: 206 GNTARGASSPAKPALHIPDPLSTT 135
           GNT R    PAKPAL++P P S T
Sbjct: 80  GNTNRRTRIPAKPALNLPSPPSKT 103


>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 206 GNTARGASSPAKPALHIPDPLSTT 135
           GNT R    PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563


>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 709

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 225 SSPGRHGRHGSEGLLRR**GTEQEGYPHTQIPHRTRHRH 341
           S  G HGR G+EG L R    EQ       +   TRH H
Sbjct: 134 SCGGIHGREGTEGKLNRNRKPEQGTGKRNMMLAETRHTH 172


>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 206 GNTARGASSPAKPALHIPDPLSTT 135
           GNT R     AKPAL++P P S T
Sbjct: 40  GNTNRRTRIQAKPALNLPSPPSKT 63


>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 206 GNTARGASSPAKPALHIPDPLSTT 135
           GNT R    PAKP L IP P + T
Sbjct: 68  GNTNRRTRIPAKPTLTIPSPPTKT 91


>SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 363 LLHIVPVGDDAVFDGVFECEDTPLALCLITYVGVLLT 253
           LL +VP  D  + + + E ED  L  CL   +GV  T
Sbjct: 310 LLKLVPNLDTCIEESLTESEDVELGRCLYNNIGVQCT 346


>SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034)
          Length = 629

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +2

Query: 2   HEGELEL*RCAALPRLYNSKLIYLFNRTI*LKTNSQCATRKLPRWS*TMGPECAKPVSR- 178
           H  EL++    +LP       I+  N +      S    R++PR S  M P  A+PVS+ 
Sbjct: 258 HMKELDMSPAKSLPSPQMQN-IHFSNSSPAKVIRSPPQAREVPRLSHQMSP-AAEPVSQL 315

Query: 179 ETTLPAPYFPRSWGDLVTR 235
            +++P+P  P+  G  V+R
Sbjct: 316 MSSIPSPGMPQGAGHGVSR 334


>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
          Length = 766

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 127 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 231
           + +++D GS   KAGFA ++A +  + S++G   H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516


>SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19)
          Length = 769

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 366 DLLHIVPVGDDAVFDGVFECEDTPLALCLITYVGVLL 256
           D L  +PVG DA FDG  +  DT   +C  T +  ++
Sbjct: 320 DALSRLPVGPDAQFDGKEDSADTD-CICTKTVLATVM 355


>SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1287

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 143 TMGPECAKPVSRETTLPAPYFPRSW 217
           T GP  A+  S+E   P P+F   W
Sbjct: 382 TQGPSVARQNSKEDVTPRPWFLEMW 406


>SB_3368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 300 YPHTQIPHRTRHRHQLGRYGEDLASHLL 383
           Y H Q+P+ TR  H   RY + ++ H L
Sbjct: 41  YKHAQVPNSTRTLHL--RYSQQISPHFL 66


>SB_14023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 176 RETTLPAPYFPRSWGDLVTRASWSAWVRRTP 268
           RE  +P      +W       SW+AWV + P
Sbjct: 252 REQPIPQQVDVSTWNKPFCNRSWTAWVEKKP 282


>SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6)
          Length = 184

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = -1

Query: 227 RGRPTIE----GNTARGASSPAKPALHIPDPLSTTNAATSSS 114
           RG P I      NT+RG   PA P   +  PL+     +S+S
Sbjct: 119 RGTPPIREDGYANTSRGDRGPASPHSFLSSPLNLRKQPSSAS 160


>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 212 IEGNTARGASSPAKPALHIPDPLSTTNAATSSSH 111
           IE +    A++P  P + +P  +   +AAT +SH
Sbjct: 225 IERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258


>SB_14615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 209 EGNTARGASSP-AKPALHIPDPLSTTNAATSS 117
           +G T R  SS  A+P L++P P S T ++ SS
Sbjct: 79  DGGTNRTRSSASAEPTLNLPSPPSKTPSSASS 110


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -1

Query: 254 PMPTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSSHIVN*F 96
           P PT TP  + RP          S+ A P LHIP+         S + +VN F
Sbjct: 741 PPPTRTPSGKDRPH---------STTATPTLHIPERTRRNKKPKSRAEVVNWF 784


>SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3)
          Length = 171

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 209 EGNTARGASSP-AKPALHIPDPLSTTNAATSS 117
           +G T R  SS  A+P L++P P S T ++ SS
Sbjct: 79  DGGTNRTRSSASAEPTLNLPSPPSKTPSSASS 110


>SB_21813| Best HMM Match : CutA1 (HMM E-Value=8.3)
          Length = 200

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 209 EGNTARGASSP-AKPALHIPDPLSTTNAATSS 117
           +G T R  SS  A+P L++P P S T ++ SS
Sbjct: 79  DGGTNRTRSSASAEPTLNLPSPPSKTPSSASS 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,431,150
Number of Sequences: 59808
Number of extensions: 263057
Number of successful extensions: 714
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -