Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G15
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 269 1e-72
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 259 1e-69
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 247 5e-66
02_01_0759 - 5628913-5630870,5631023-5631047 31 0.43
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.57
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 0.76
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 1.0
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557... 28 4.0
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467... 28 5.3
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 27 7.1
08_02_0567 + 18769742-18769790,18769928-18771351 27 7.1
07_03_0770 - 21375099-21375122,21375321-21375448,21375541-213756... 27 9.3
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 269 bits (659), Expect = 1e-72
Identities = 123/165 (74%), Positives = 137/165 (83%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 388
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 389 KPQGTVARVRIGQAIMSVRSSDRWKAQVIEALRRG*FKFPGRQKI 523
KPQGT ARV IGQ ++SVR + EALRR FKFPGRQKI
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKI 165
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 259 bits (634), Expect = 1e-69
Identities = 117/161 (72%), Positives = 133/161 (82%)
Frame = +2
Query: 41 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 220
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 221 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 400
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 401 TVARVRIGQAIMSVRSSDRWKAQVIEALRRG*FKFPGRQKI 523
T ARVRIGQ ++SVR D A EALRR FKFPGRQ++
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRV 472
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 247 bits (604), Expect = 5e-66
Identities = 113/158 (71%), Positives = 128/158 (81%)
Frame = +2
Query: 50 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 229
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 230 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 409
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 410 RVRIGQAIMSVRSSDRWKAQVIEALRRG*FKFPGRQKI 523
RV IGQ ++SVR EALRR FKFPGRQKI
Sbjct: 124 RVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKI 161
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 31.5 bits (68), Expect = 0.43
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -1
Query: 453 SLERTDIMACPIRT---RATVPWGFPNAPRIPVWSLSAPAHDNILLMRMTWKGCSLIRMW 283
SLER DI CP+ T A V G PN + V S S +D +R + CS I+
Sbjct: 233 SLERLDITRCPLITDKGLAAVAHGCPNLLSLTVESCSGVGNDG---LRAIGRSCSKIQAL 289
Query: 282 N 280
N
Sbjct: 290 N 290
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.57
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 152 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 271
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 257 RGTCCNRYGLLPAPQNSAARTHQTLSARIVGSHPLS 150
R CC GL P P S+ R+ +L A S P+S
Sbjct: 179 RSRCCRHRGLSPPPSRSSPRSPSSLPAAPAASLPVS 214
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.3 bits (65), Expect = 1.0
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = -1
Query: 432 MACPIRTRATVPWGFPNAPRIPVWSLSAPAH 340
++CP+ + + VP P++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>06_03_0175 +
17553447-17553667,17555313-17555467,17555625-17555713,
17556253-17556376,17556920-17556989,17557345-17557441,
17559365-17559427,17559504-17559581,17559675-17559737
Length = 319
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 71 YSYNIDNISLVGAPLCSPQSD 9
Y Y D I L+G PLC P SD
Sbjct: 168 YLYPYDEIVLLGIPLCVPWSD 188
>03_03_0149 +
14843880-14844145,14846501-14846561,14846608-14846720,
14848448-14848540,14849578-14849793,14853773-14856023
Length = 999
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 347 QRTTTFY*CG*HGRGVVSSGCGTDLYRSSLRGTCCNRYGLLPAPQ 213
+ TTT CG HGR ++SS L+++++ G+ +Y + PQ
Sbjct: 134 RETTTTSSCGEHGRILLSSP-SPSLFKANVLGSLAYKYITMGIPQ 177
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 341 CAGADRLQTGMRGAFGKPQG---TVARVRIGQAI 433
C+GA + + RG G+P+G V+R+R G A+
Sbjct: 52 CSGATKPECYARGVMGQPRGRLPAVSRIRRGAAL 85
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +2
Query: 371 MRGAFGKPQG--TVARVRIGQAIMSVRSSDRW-KAQVIEALRRG*FKFPGRQKI 523
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>07_03_0770 -
21375099-21375122,21375321-21375448,21375541-21375672,
21377016-21377874
Length = 380
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 293 SGCGTDLYRSSLRGTCCNR 237
+GCGT++ R ++ G CNR
Sbjct: 97 AGCGTNVSRDAVAGPTCNR 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,162,671
Number of Sequences: 37544
Number of extensions: 368661
Number of successful extensions: 1010
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -