Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G15
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   1.5  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   4.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.8  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   7.8  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 230 LLPAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLG 111
           L+  P  + +  H  + A  V  + LSLS  P   +GS G
Sbjct: 2   LVARPMQALSIRHAVILASFVWIYALSLSLPPLFGWGSYG 41


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 102 VCLTQRSVFSTWAKRERQWMTSH 170
           +CLT+R +   +  R  +W   H
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKEH 67


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = -1

Query: 519 FWRPGNLN*PRRRASMTCAFQRSLERTDIMACPI 418
           +W   N   P  R S++C  Q +     I  C +
Sbjct: 104 YWNTKNCVNPYDRDSLSCWLQMTKHHNFIKVCSV 137


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +1

Query: 394 PRHSSACAYWTGHYVCTL 447
           P+  +   YW+ +++CT+
Sbjct: 31  PKDHNGSIYWSMYHLCTV 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,910
Number of Sequences: 438
Number of extensions: 3692
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)