Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G14
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   151   7e-38
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    27   1.5  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   4.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   6.0  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.9  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  151 bits (365), Expect = 7e-38
 Identities = 73/133 (54%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
 Frame = +3

Query: 51  IPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHT 230
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 231 KVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP 410
           KVRAGRGFTL E++A+G++   A TIGI VD RRRN+S ESLQ NV+R+K Y A LI+FP
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127

Query: 411 -KGKKVLKGEANE 446
            K  +  KG+A +
Sbjct: 128 RKAGQPKKGDATD 140


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 152 LFYSILLSTMTTSWLIKPCLHKS--LPILMEMAIWYHIIPFTH 30
           L  S+ L  +T +WL++    +S   P  + +A W  I  FTH
Sbjct: 204 LAISMFLGFITLTWLLRCIKSQSGVQPAQISLAFWVFIFVFTH 246


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 285 NPSFARTIGIAVDPRRRNKSVESLQINV 368
           NPS A    +A D    ++S+ES   NV
Sbjct: 396 NPSVAAASNVAADQSTEDESIESTSTNV 423


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 382  NIELVLFFSRRARRY*RVKLMKKSANWLL 468
            N+E+ + F+   R+  R+ L KKS N LL
Sbjct: 1502 NMEMWIKFANLCRKSGRISLAKKSLNLLL 1530


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 158  FSLFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWY 51
            FSL +    +  T  W+ + CL + +  +   A+WY
Sbjct: 2094 FSLNFGEEGAVQTRIWVFRACLVQGVQQVWSAALWY 2129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,920,186
Number of Sequences: 5004
Number of extensions: 35492
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)