Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G14
(483 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 160 4e-40
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 160 4e-40
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 155 2e-38
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 144 4e-35
At5g12280.1 68418.m01444 hypothetical protein 28 2.9
At1g62250.2 68414.m07023 expressed protein 28 2.9
At1g62250.1 68414.m07022 expressed protein 28 2.9
At5g08170.1 68418.m00954 porphyromonas-type peptidyl-arginine de... 28 3.8
At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SD... 27 5.0
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 27 6.6
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 27 6.6
At2g01930.2 68415.m00128 expressed protein 27 6.6
At2g01930.1 68415.m00127 expressed protein 27 6.6
At3g62710.1 68416.m07044 glycosyl hydrolase family 3 protein exh... 27 8.8
At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein bet... 27 8.8
At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein si... 27 8.8
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 160 bits (389), Expect = 4e-40
Identities = 77/149 (51%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Frame = +3
Query: 36 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 215
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 216 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 395
++Y+ KVR G+GFTL E++A+G+ A TIGIAVD RR+N+S+E LQ NVQRLK Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 396 LILFP-KGKKVLKGEANEEERKLATQLHG 479
L++FP + +KV G++ EE ATQ+ G
Sbjct: 122 LVIFPRRARKVKAGDSTPEELANATQVQG 150
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 160 bits (389), Expect = 4e-40
Identities = 77/149 (51%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Frame = +3
Query: 36 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 215
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 216 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 395
++Y+ KVR G+GFTL E++A+G+ A TIGIAVD RR+N+S+E LQ NVQRLK Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 396 LILFP-KGKKVLKGEANEEERKLATQLHG 479
L++FP + +KV G++ EE ATQ+ G
Sbjct: 122 LVIFPRRARKVKAGDSTPEELANATQVQG 150
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 155 bits (375), Expect = 2e-38
Identities = 74/149 (49%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Frame = +3
Query: 36 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 215
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 216 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 395
++Y+ KVRAG+GFTL E++ +G+ A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAK 121
Query: 396 LILFP-KGKKVLKGEANEEERKLATQLHG 479
L++FP + ++V G++ EE ATQ+ G
Sbjct: 122 LVVFPRRSRQVKAGDSTPEELANATQVQG 150
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 144 bits (348), Expect = 4e-35
Identities = 69/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Frame = +3
Query: 36 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 215
K NN+IPNGHF K W+ +VKT FNQPA + RR+ R +RPVV T
Sbjct: 2 KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61
Query: 216 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 395
+ Y+ KVRAG+GFTL E++A+G+ A TIGI+VD R+N+S+E Q NVQRLK Y+A+
Sbjct: 62 LTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAK 121
Query: 396 LILFPKGKKVLK-GEANEEERKLATQL 473
L++FP+ + +K G++ ++E ATQ+
Sbjct: 122 LVIFPRCARTVKVGDSAQQELANATQV 148
>At5g12280.1 68418.m01444 hypothetical protein
Length = 419
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 342 SVESLQINVQRLKEYRARLILFPKGKKVLKGEA 440
+V+SL NV LKE + I FP K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394
>At1g62250.2 68414.m07023 expressed protein
Length = 223
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 219 RYHTKVRAGRGFTLREIRASGLNPSFARTIGIA-VDPRRRNKSVESLQINVQRLKEY 386
RY T + G G TL+E ++G+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At1g62250.1 68414.m07022 expressed protein
Length = 267
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 219 RYHTKVRAGRGFTLREIRASGLNPSFARTIGIA-VDPRRRNKSVESLQINVQRLKEY 386
RY T + G G TL+E ++G+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At5g08170.1 68418.m00954 porphyromonas-type peptidyl-arginine
deiminase family protein contains Pfam PF04371:
Porphyromonas-type peptidyl-arginine deiminase
Length = 383
Score = 27.9 bits (59), Expect = 3.8
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 1/99 (1%)
Frame = +3
Query: 75 DWQRFVKTWFNQPARRHRRKQNRI-XXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRG 251
+W +TW P R+ + N + PV C + R
Sbjct: 18 EWDSHAQTWIGWPERQDNWRHNALPAQRVFADVAKAISKFEPVTVCASPAQWENARKQLP 77
Query: 252 FTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINV 368
+R + S +N S+ R G R+R + SL N+
Sbjct: 78 EDIRVVEMS-MNDSWFRDSGPTFIVRKRPVKLSSLNRNI 115
>At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198 short
chain dehydrogenase/reductase SDR family
Length = 279
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 295 KEGFNPEALISRRVNPLPARTF 230
+E A IS+R+NP PA TF
Sbjct: 210 EEAIRERAFISQRMNPTPAETF 231
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 230 KSSCRQRIYPT*NKGFWIEPFFCQNNWYCC 319
KS CR R P G +P C+N W C
Sbjct: 651 KSQCRSRQCPCFAAGRECDPDVCRNCWVSC 680
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 3 PRRSGKSFKMGKGNNMIPNGHFHKDWQRFVKT 98
P++SG+ F + +M+P+ H H Q + T
Sbjct: 122 PQQSGQQFPQQQSQSMVPHPHGHPSVQTYQPT 153
>At2g01930.2 68415.m00128 expressed protein
Length = 283
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 9 RSGKSFKMGKGNNMI--PNGHFHKDWQRFVKTWFNQP 113
R+ K F G+ +N++ NG +H Q +W NQP
Sbjct: 34 RNTKPFLPGRESNLMIGSNGSYHSREQDMNYSWINQP 70
>At2g01930.1 68415.m00127 expressed protein
Length = 283
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 9 RSGKSFKMGKGNNMI--PNGHFHKDWQRFVKTWFNQP 113
R+ K F G+ +N++ NG +H Q +W NQP
Sbjct: 34 RNTKPFLPGRESNLMIGSNGSYHSREQDMNYSWINQP 70
>At3g62710.1 68416.m07044 glycosyl hydrolase family 3 protein
exhydrolase II - Zea mays, EMBL:AF064707
Length = 650
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 255 TLREIRASGLNPSFARTIGIAVDPR 329
T +E+RA+G+ +FA + + DPR
Sbjct: 171 TAQEVRATGVAQAFAPCVAVCRDPR 195
>At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 581
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 255 TLREIRASGLNPSFARTIGIAVDPR 329
T EIRASG++ +FA + + DPR
Sbjct: 109 TALEIRASGVHWTFAPCVAVLGDPR 133
>At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein
similar to plant adhesion molecule 1 [Arabidopsis
thaliana] GI:3511223; contains Pfam profile PF00566: TBC
domain
Length = 400
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -2
Query: 143 SILLSTMTTSWLIKPCLHKSLPILMEMAIWYHI 45
S+ LST+T + +K + K +P ++ +W+ +
Sbjct: 97 SLKLSTLTNAITLKRLIRKGIPPVLRPKVWFSL 129
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,007,171
Number of Sequences: 28952
Number of extensions: 185785
Number of successful extensions: 432
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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