Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G13
(417 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 207 6e-55
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 207 6e-55
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 111 3e-26
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 62 4e-11
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 38 6e-04
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 30 0.17
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 30 0.17
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 28 0.67
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 27 1.2
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 1.5
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 26 2.0
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 26 2.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 3.6
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 4.7
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 4.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 6.2
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 6.2
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 24 8.2
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 24 8.2
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 24 8.2
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 207 bits (505), Expect = 6e-55
Identities = 95/138 (68%), Positives = 112/138 (81%)
Frame = +3
Query: 3 TREESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSP 182
T ESGEHIVAGAGELHLEICLKDL+EDHA IP+K S PVVSYRE+VSE S LSKSP
Sbjct: 521 TTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTALSKSP 580
Query: 183 NKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEG 362
NKHNR+FM A+PM E L I+ G VNPRDDFK RAR ++D++ +D+T+ARKIWCFGP+
Sbjct: 581 NKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDT 640
Query: 363 TGPNILVDCSKGVQYLNE 416
TG N++VD +K V YLNE
Sbjct: 641 TGANVVVDQTKAVAYLNE 658
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 207 bits (505), Expect = 6e-55
Identities = 95/138 (68%), Positives = 112/138 (81%)
Frame = +3
Query: 3 TREESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSP 182
T ESGEHIVAGAGELHLEICLKDL+EDHA IP+K S PVVSYRE+VSE S LSKSP
Sbjct: 521 TTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTALSKSP 580
Query: 183 NKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEG 362
NKHNR+FM A+PM E L I+ G VNPRDDFK RAR ++D++ +D+T+ARKIWCFGP+
Sbjct: 581 NKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDT 640
Query: 363 TGPNILVDCSKGVQYLNE 416
TG N++VD +K V YLNE
Sbjct: 641 TGANVVVDQTKAVAYLNE 658
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 111 bits (268), Expect = 3e-26
Identities = 52/126 (41%), Positives = 76/126 (60%)
Frame = +3
Query: 9 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNK 188
EESGEH + G GE++++ L DL ++ I I+ SDPV + ET + S C S +PNK
Sbjct: 635 EESGEHTIFGTGEMYMDCLLYDLRTLYSEIEIRVSDPVARFCETAVDTSSIKCFSDTPNK 694
Query: 189 HNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTG 368
NR+ M +P+ +G+ DI++GKVN K + + Y++DL +R IW FGP+ G
Sbjct: 695 KNRITMVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIWAFGPDDRG 754
Query: 369 PNILVD 386
NIL D
Sbjct: 755 TNILRD 760
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 61.7 bits (143), Expect = 4e-11
Identities = 29/56 (51%), Positives = 37/56 (66%)
Frame = +3
Query: 9 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSK 176
EE+GEH++ AGE+HLE CLKDL E A I I+ S P+V YRET D + +K
Sbjct: 598 EENGEHVIMCAGEIHLERCLKDLRERFAKIEIQASQPLVPYRETTIATPDLLAKNK 653
Score = 27.5 bits (58), Expect = 0.88
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +3
Query: 168 LSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARK--- 338
+S + +K NR + ++ + + + E + K F R L ++ DL E +
Sbjct: 696 VSSNFSKKNRNVVVSESLTKSMEEVLTPEK------FYERLSKLLEEENSDLGELKNHLD 749
Query: 339 -IWCFGPEGTGPNILVDCSK 395
I FGP+ GPNIL D +K
Sbjct: 750 SIIAFGPKRVGPNILFDKTK 769
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 37.9 bits (84), Expect = 6e-04
Identities = 17/47 (36%), Positives = 32/47 (68%)
Frame = +3
Query: 12 ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEE 152
ES E I++G GELHLE+ ++ + ++ + + P V++RET+S++
Sbjct: 511 ESKETIISGMGELHLEVYVERMRREYK-VDCETGKPRVAFRETLSKK 556
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 29.9 bits (64), Expect = 0.17
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 66 LKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPE 227
+K LEE+ + +K SD V + ++ + P +++FM PMP+
Sbjct: 287 VKYLEENFGALKVKLSDATVKEIREACDNAEVIGARYPPGAGSKIFMDTPPMPK 340
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 29.9 bits (64), Expect = 0.17
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 63 CLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPEGL 233
C++DL++ + K+SD Y T++ ++KS KHN+L K +P+P L
Sbjct: 214 CVRDLKKLEKKVK-KRSDLGNKYESTLNS-----LINKSVKKHNKLVKKHKPLPSTL 264
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 27.9 bits (59), Expect = 0.67
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 12 ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNKH 191
E+G+ ++ G G +HL++ + L + V YRET+ + S + NK
Sbjct: 481 ENGQLLIQGMGIMHLQVSYERLVSEFGA-RASLGKVQVGYRETLIDVSFNSVTLSTENKE 539
Query: 192 N 194
N
Sbjct: 540 N 540
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 27.1 bits (57), Expect = 1.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 231 LPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARK 338
LPE ID+GK++ DD KT + D + K
Sbjct: 194 LPEKIDEGKLSDVDDGKTYICWRGDSQYVSINRLEK 229
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 26.6 bits (56), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 321 LTEARKIWCFGPEGTGPNILVD--CSKGVQYLNE 416
L E + GP G+G ++LVD S+ Q +NE
Sbjct: 572 LGEGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 2.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 132 RETVSEESDQMCLSKSPNKHNRLFMKAQP 218
R T EE + L+KSP+ HNR+ P
Sbjct: 466 RLTDDEEREIRALAKSPDIHNRIIASMAP 494
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.8 bits (54), Expect = 2.7
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -3
Query: 169 KHIWSDSSLTVSRYDTTGSDFLIGM 95
+HIW + L + R + G D ++G+
Sbjct: 57 EHIWQNEELNLQRVEYQGKDCILGI 81
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 57 EICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNK 188
E+C +LE+D I +S +S + +++ DQ+ S + +K
Sbjct: 64 ELCNFELEKDSLESMIHESSTALSAQSNTAQDGDQLASSSTISK 107
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 4.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 235 GRPSGMGWAFMKRRLCLL 182
G P G+ WA M R+C L
Sbjct: 228 GFPGGVAWAMMVARICQL 245
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 4.7
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +3
Query: 243 IDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTGPNIL 380
+++ K R+ + Y + +T ++ + FGP GTG +L
Sbjct: 502 LEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 222 PEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLT 326
P G+ +D D+ +N + T S K+ YD T
Sbjct: 386 PYGVDQDFDETCINESEQQATHIPNSSIKFNYDYT 420
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 6.2
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = +3
Query: 51 HLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPEG 230
HL++CL D +E+ + K + E S ++ LSK + + + M +
Sbjct: 475 HLKLCLSDSQEELLQLNAKLEKANIVIDEL---NSAKLKLSKQVEEESSMKDDLTEMNQR 531
Query: 231 LPEDID--DGKVNPRDDFKTRARY--LSDKYEYDLTEARK 338
L E I+ + +VN +T + L +YE +L R+
Sbjct: 532 LKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLRE 571
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 229 PSGMGWAFMKRRLCLLGDLDKHIWSDSSLTVSRY 128
P+G G + LC+L +L KH+ D S + +
Sbjct: 543 PTGAGKTNVAM-LCILNELQKHLREDLSFNLQNF 575
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 274 SSRGFTLPSSISSGRPSGMGWAFMKRRL 191
S GF+L SI+ G SG+G +F+ RL
Sbjct: 131 SLEGFSLLHSIAGGTGSGLG-SFLLERL 157
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = +3
Query: 96 IPIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPE 227
+ + +S +++ E V + +D CL+ HN + +P+ E
Sbjct: 286 LSLSESGKLLTALEKVGQANDHTCLASIDFMHNFVIAVIEPLQE 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,534,859
Number of Sequences: 5004
Number of extensions: 29675
Number of successful extensions: 121
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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