Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G13
(417 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 245 1e-65
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 6e-31
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 54 5e-08
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.072
SB_59368| Best HMM Match : eRF1_1 (HMM E-Value=7.7) 31 0.38
SB_53016| Best HMM Match : eRF1_1 (HMM E-Value=4.9) 31 0.38
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 30 0.88
SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05) 29 1.2
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 29 1.5
SB_44703| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 28 3.6
SB_13183| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.7
SB_49282| Best HMM Match : HEAT (HMM E-Value=0.016) 27 6.2
SB_14584| Best HMM Match : IBV_3C (HMM E-Value=4.1) 27 6.2
SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20) 27 6.2
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6) 27 6.2
SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_1697| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_56271| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 27 8.2
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 245 bits (600), Expect = 1e-65
Identities = 112/137 (81%), Positives = 124/137 (90%), Gaps = 1/137 (0%)
Frame = +3
Query: 9 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNK 188
EESGEHIVAGAGELHLEICLKDLEEDHACIP+KKS+PVVSYRE VS++S+QMCLSKSPNK
Sbjct: 513 EESGEHIVAGAGELHLEICLKDLEEDHACIPLKKSEPVVSYRECVSDKSNQMCLSKSPNK 572
Query: 189 HNRLFMKAQPMPEGLPEDIDDG-KVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGT 365
HNRLFM A P+ E LPEDIDDG ++NPR DFK RARYL+D Y +D+ EARKIW FGPEGT
Sbjct: 573 HNRLFMTAGPLEEKLPEDIDDGCEINPRQDFKIRARYLADTYGWDVNEARKIWSFGPEGT 632
Query: 366 GPNILVDCSKGVQYLNE 416
GPN+LVD SKGVQYLNE
Sbjct: 633 GPNLLVDVSKGVQYLNE 649
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 130 bits (313), Expect = 6e-31
Identities = 60/126 (47%), Positives = 85/126 (67%)
Frame = +3
Query: 9 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNK 188
EESGEH++ G GEL+L+ + DL ++ I IK +DPV+++ ETV E S C +++PNK
Sbjct: 490 EESGEHVILGTGELYLDCIMHDLRRMYSEIDIKVADPVIAFCETVVETSSLKCFAETPNK 549
Query: 189 HNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTG 368
N++ M A+P+ +GL EDI++ KV + K + KY++DL AR IW FGPE TG
Sbjct: 550 KNKVTMIAEPLEKGLAEDIENEKVLISWNKKKLGEFFQTKYDWDLLAARSIWAFGPENTG 609
Query: 369 PNILVD 386
PNILVD
Sbjct: 610 PNILVD 615
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 54.0 bits (124), Expect = 5e-08
Identities = 19/41 (46%), Positives = 31/41 (75%)
Frame = +3
Query: 21 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 143
EH++ AGE+HL+ C+ DL+ +AC+ + SDP++ +RETV
Sbjct: 2 EHVIIAAGEVHLQRCVDDLKRRYACVELNVSDPIIPFRETV 42
Score = 34.3 bits (75), Expect = 0.041
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 330 ARKIWCFGPEGTGPNILVD 386
A IW FGP GTGPNIL++
Sbjct: 179 ADHIWAFGPRGTGPNILLN 197
>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 33.5 bits (73), Expect = 0.072
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 102 IKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPEGLP--EDIDDGKVNPRDD 275
I+K+ Y+E + +E++ + + N+H+ + AQ P+GL I++ K N R
Sbjct: 216 IEKAQKAFEYKENIEKEAEALRKQQLENRHSLISSNAQYHPQGLETYPSINEYKKNSRMV 275
Query: 276 FK 281
FK
Sbjct: 276 FK 277
>SB_59368| Best HMM Match : eRF1_1 (HMM E-Value=7.7)
Length = 334
Score = 31.1 bits (67), Expect = 0.38
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Frame = +3
Query: 6 REESGEHIVAGAGELHLEIC-LKDLEEDHAC-IPIKKSDPVVSYRETVSEESDQMCLSKS 179
R+ES + +V E ++ LKD ED + + D +V ++ E D + +
Sbjct: 138 RDESEDGLVHLKDESEDDLVHLKDESEDDLVHLKDESEDGLVHLKD---ESEDDLLRLRD 194
Query: 180 PNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEAR 335
++ N L ++ + L ++ +DG V RD+ + +L D+ E DL R
Sbjct: 195 ESEDNLLHLRDESEDVHLRDESEDGLVYLRDESEDDLVHLKDESEDDLVHLR 246
Score = 26.6 bits (56), Expect = 8.2
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +3
Query: 6 REESGEHIVAGAGELHLEIC-LKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSP 182
R+ES + +V E ++ LKD ED +S+ + Y + SE+ +S
Sbjct: 213 RDESEDGLVYLRDESEDDLVHLKDESEDDLVHLRDESEDGLVYLKDESEDGLVHLRDESE 272
Query: 183 NKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEAR 335
+ H R +++ L ++ +DG V+ RD+ + +L D+ E DL +
Sbjct: 273 DVHLR--NESEDGLVHLRDESEDGLVHLRDESEDGLVHLEDESEDDLVHLK 321
>SB_53016| Best HMM Match : eRF1_1 (HMM E-Value=4.9)
Length = 813
Score = 31.1 bits (67), Expect = 0.38
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Frame = +3
Query: 6 REESGEHIVAGAGELHLEIC-LKDLEEDHAC-IPIKKSDPVVSYRETVSEESDQMCLSKS 179
R+ES + +V E ++ LKD ED + + D +V ++ E D + +
Sbjct: 612 RDESEDGLVHLKDESEDDLVHLKDESEDDLVHLKDESEDGLVHLKD---ESEDDLLRLRD 668
Query: 180 PNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEAR 335
++ N L ++ + L ++ +DG V RD+ + +L D+ E DL R
Sbjct: 669 ESEDNLLHLRDESEDVHLRDESEDGLVYLRDESEDDLVHLKDESEDDLVHLR 720
Score = 29.5 bits (63), Expect = 1.2
Identities = 24/110 (21%), Positives = 49/110 (44%)
Frame = +3
Query: 6 REESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPN 185
R+ES + + E L + E+D + + D +V R+ E D + K +
Sbjct: 678 RDESEDVHLRDESEDGLVYLRDESEDDLVHLKDESEDDLVHLRD---ESEDGLVYLKDES 734
Query: 186 KHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEAR 335
+ + ++ + L ++ +DG V+ RD+ + +L D+ E DL +
Sbjct: 735 EDGLVHLRDESEDVHLRDESEDGLVHLRDESEDDLVHLKDESEDDLVHLK 784
>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 1021
Score = 29.9 bits (64), Expect = 0.88
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +3
Query: 81 EDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKV 260
+DH C + + + V+ E D+ CL + P + M P+ D G+
Sbjct: 33 KDHTCAAL-----LYTKMTAVNLEGDEPCLMEKPREPRNNDMNTTHYGGKTPDPRDGGRD 87
Query: 261 NPRDDFKTR 287
PRDD K +
Sbjct: 88 GPRDDEKQK 96
>SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05)
Length = 974
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +3
Query: 6 REESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCL 170
R+E EH+ GE +C + + DH C D + R + ++ D M L
Sbjct: 201 RKEGEEHV---CGEYKCSVCKEVVPPDHLCYVTVGGDALPKKRNSADDDDDSMRL 252
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 147 EESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDI-DDGKVNPRDDFKTR--ARYLSDKYEY 317
++SD S+SP + M+A + D+ D G+ NP ++ + A Y++ +Y Y
Sbjct: 886 KDSDDTATSRSPRSKGKRVMQADASRSDVSLDVPDKGQTNPEEEVEGEHLAVYIA-RYSY 944
Query: 318 D 320
D
Sbjct: 945 D 945
>SB_44703| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 757
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 219 MPEGLPEDI--DDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPE 359
+P+G + + +D K R FK A S K E D T A K+W + P+
Sbjct: 473 LPDGWRQTLHKEDHKWIARSLFKVNAS--SGKAELDFTRADKLWMYPPQ 519
>SB_13183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 259 TLPSSISSGRPSGMGWAFMKRRLCLLGDLDKHIWSDSSLTVSRYDTTG 116
T PSS R SG GW + L + ++S+ S+ VSR+ +G
Sbjct: 192 TPPSSSKDARVSGPGWVLVSLGFGALMFISHSVFSEVSI-VSRWGVSG 238
>SB_49282| Best HMM Match : HEAT (HMM E-Value=0.016)
Length = 474
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +3
Query: 135 ETVSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDD 275
ETV + M P K R +QP + ED DD + DD
Sbjct: 119 ETVQHKEPVMAKQGRPTKTRRTAQPSQPQVNEMDEDSDDEDDDNDDD 165
>SB_14584| Best HMM Match : IBV_3C (HMM E-Value=4.1)
Length = 311
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 219 MPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIW 344
M G+P+ DG N DDF ++ + KYE T W
Sbjct: 263 MNHGIPQSEVDGIFNLMDDFFNLSKDVKSKYEKKDTSQPNGW 304
>SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 219 MPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIW 344
M G+P+ DG N DDF ++ + KYE T W
Sbjct: 66 MNHGIPQSEVDGIFNLMDDFFNLSKDVKSKYEKKDTSQPNGW 107
>SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20)
Length = 918
Score = 27.1 bits (57), Expect = 6.2
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -3
Query: 400 TPLEQSTRMLGPVPSGPK 347
TP+E+ T+++GP P P+
Sbjct: 14 TPVEEETKLIGPTPVAPQ 31
>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
Length = 160
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 6 REESGEHIVAGAGELHLEICLKDLEE 83
+E EH+VA +G+L E C K L +
Sbjct: 32 KEFQNEHLVAQSGKLRFEACKKTLSK 57
>SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 9 EESGEHIVAGAGELHLEI 62
+ES E I++G GELHL++
Sbjct: 60 DESKETIISGMGELHLDV 77
>SB_1697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 647
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 6 REESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYR-ETVSEESDQMCL 170
R++ EH+ GE +C + + DH C D + + T ++ D MCL
Sbjct: 331 RKKGEEHV---CGEYKCSVCKEVVPPDHLCYLTVGDDALPKKKNSTDDDDDDSMCL 383
>SB_56271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 225 EGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTGP 371
EG+P+D+ + P K R + +++ L E RK GPEG P
Sbjct: 31 EGIPKDVKHKLLKPLVPAKARPEEVWSEFDPLLPERRK---KGPEGLDP 76
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 180 PNKHNRLFMKAQPMPEGLPEDIDDGKVNPRD 272
PN N F+KA P+ +G D + G + RD
Sbjct: 413 PNTGNTEFVKAIPIEDGESHDSNYGTIESRD 443
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,048,480
Number of Sequences: 59808
Number of extensions: 238412
Number of successful extensions: 786
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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