Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G13
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   247   2e-66
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   242   8e-65
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...   117   4e-27
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.       113   6e-26
Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical pr...    45   3e-05
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    45   3e-05
Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical pr...    42   1e-04
U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile (un...    35   0.027
AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AL021066-2|CAH10790.1|  124|Caenorhabditis elegans Hypothetical ...    29   1.8  
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p...    28   3.1  
AF003130-8|AAB54130.2|  611|Caenorhabditis elegans Pip kinase pr...    27   5.5  
Z81074-8|CAB03043.1|  413|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile (un...    27   7.2  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    26   9.5  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical
           protein F25H5.4 protein.
          Length = 852

 Score =  247 bits (605), Expect = 2e-66
 Identities = 108/136 (79%), Positives = 124/136 (91%)
 Frame = +3

Query: 9   EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNK 188
           EESGEHI+AGAGELHLEICLKDLEEDHACIP+KKSDPVVSYRETV  ES+Q+CLSKSPNK
Sbjct: 533 EESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETVQSESNQICLSKSPNK 592

Query: 189 HNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTG 368
           HNRL   AQPMP+GL +DI+ G VN RD+FK RA+ L++KYEYD+TEARKIWCFGP+GTG
Sbjct: 593 HNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEKYEYDVTEARKIWCFGPDGTG 652

Query: 369 PNILVDCSKGVQYLNE 416
           PN+L+D +KGVQYLNE
Sbjct: 653 PNLLMDVTKGVQYLNE 668


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
           protein.
          Length = 852

 Score =  242 bits (592), Expect = 8e-65
 Identities = 106/136 (77%), Positives = 122/136 (89%)
 Frame = +3

Query: 9   EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNK 188
           EESGEHI+AGAGELHLEICLKDLEEDHACIP+KKSDPVVSYRETV  ES+Q+CLSKSPNK
Sbjct: 533 EESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETVQSESNQICLSKSPNK 592

Query: 189 HNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTG 368
           HNRL   AQPMP+GL +DI+ G V+ RD+FK RA+Y  +KYEY +TEARKIWCFGP+GTG
Sbjct: 593 HNRLHCTAQPMPDGLADDIEGGTVSARDEFKARAKYPGEKYEYAVTEARKIWCFGPDGTG 652

Query: 369 PNILVDCSKGVQYLNE 416
           PN+L+D +KGVQYLNE
Sbjct: 653 PNLLMDVTKGVQYLNE 668


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score =  117 bits (281), Expect = 4e-27
 Identities = 53/126 (42%), Positives = 81/126 (64%)
 Frame = +3

Query: 9    EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNK 188
            EESGEH++ G GE +++  + D+ +  + I IK +DPVV++ ETV E S   C +++PNK
Sbjct: 626  EESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIKVADPVVTFNETVIETSTLKCFAETPNK 685

Query: 189  HNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTG 368
             N++ M A+P+ + L EDI++  V    + +    +   KY +DL  AR IW FGP+ TG
Sbjct: 686  KNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIWAFGPDTTG 745

Query: 369  PNILVD 386
            PNIL+D
Sbjct: 746  PNILLD 751


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score =  113 bits (271), Expect = 6e-26
 Identities = 52/126 (41%), Positives = 80/126 (63%)
 Frame = +3

Query: 9   EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNK 188
           EESGEH++ G GE +++  + D+ +  + I IK +DPVV++ ETV E S   C +++PNK
Sbjct: 501 EESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIKVADPVVTFNETVIETSTLKCFAETPNK 560

Query: 189 HNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTG 368
            N++ M A+P+ + L EDI++  V    + +    +   KY +DL  AR IW FG + TG
Sbjct: 561 KNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIWAFGLDTTG 620

Query: 369 PNILVD 386
           PNIL+D
Sbjct: 621 PNILLD 626


>Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical
           protein K10C3.5b protein.
          Length = 705

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 21/48 (43%), Positives = 32/48 (66%)
 Frame = +3

Query: 12  ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEES 155
           E+GE  +  AGE+HL+ C+KDL  D   + +  S+P+V + ETV E+S
Sbjct: 513 ENGELAMVTAGEVHLQKCIKDL-NDLGLVDLDVSEPIVPFMETVIEDS 559


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical
           protein K10C3.5a protein.
          Length = 894

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 21/48 (43%), Positives = 32/48 (66%)
 Frame = +3

Query: 12  ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEES 155
           E+GE  +  AGE+HL+ C+KDL  D   + +  S+P+V + ETV E+S
Sbjct: 513 ENGELAMVTAGEVHLQKCIKDL-NDLGLVDLDVSEPIVPFMETVIEDS 559


>Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical
           protein F29C12.4 protein.
          Length = 750

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 19/43 (44%), Positives = 30/43 (69%)
 Frame = +3

Query: 9   EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRE 137
           +E+ E IV+G GELHLEI  + ++ ++ C P++   P V+YRE
Sbjct: 483 QEAKETIVSGMGELHLEIYAQRMKSEYNC-PVELGKPTVAYRE 524


>U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein2 protein.
          Length = 548

 Score = 34.7 bits (76), Expect = 0.027
 Identities = 23/65 (35%), Positives = 33/65 (50%)
 Frame = +3

Query: 90  ACIPIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPR 269
           AC+PI      VS  E  S+ES+     K  +K  +  +KA  + +G+P D DDG    +
Sbjct: 228 ACLPISVKCDGVSDCENESDESNCNKCQKGAHKCGKNCIKASKVCDGIP-DCDDGSDEHQ 286

Query: 270 DDFKT 284
            D KT
Sbjct: 287 CDCKT 291


>AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical
           protein Y119D3B.14 protein.
          Length = 689

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +3

Query: 12  ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEE 152
           ++G+ IV   GELHLE  +KD  + +  + +      V+YRE ++EE
Sbjct: 431 DTGQTIVETQGELHLE-AIKDRLKRNYKLDVFIGKLQVAYREMLTEE 476


>Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical
           protein W07G1.5b protein.
          Length = 450

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 23/82 (28%), Positives = 37/82 (45%)
 Frame = +3

Query: 30  VAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMK 209
           V GA E+ LE   ++ + D A I    + PVV+ R   ++       ++S        + 
Sbjct: 293 VTGAAEI-LEFPEEEKKIDMATIHRTPTPPVVASRPATAKAPGTPA-NRSATALEAKSVS 350

Query: 210 AQPMPEGLPEDIDDGKVNPRDD 275
            QP PE   E+ D+G  +  DD
Sbjct: 351 QQPTPESSEEEEDEGNGDEDDD 372


>AL021066-2|CAH10790.1|  124|Caenorhabditis elegans Hypothetical
           protein H31B20.2 protein.
          Length = 124

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 135 ETVSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDF 278
           E V +E D+M  ++ P+K + L ++ Q   +    D D+ K    DDF
Sbjct: 78  EFVEQEEDEMIRTEGPSKASELPIREQSKRKEAVSDADESK-QDEDDF 124


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 99   PIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPE 227
            P   S+ V + R+T   E+ Q  ++K+P+  N   ++  P+PE
Sbjct: 1626 PGPTSEHVATIRKTPVRETHQSSITKAPSLENVAKIRQSPVPE 1668


>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical
           protein C47E8.8 protein.
          Length = 1675

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 184 LGDLDKHIWSDSSLTVSRYDTTGSDFLIGMQAWSSSRSLRQ 62
           +G+L + + S SS   SR+D T  D    + A SS+ + R+
Sbjct: 624 MGELQRPVTSQSSRKSSRWDVTEEDLKRKLSATSSTHNPRE 664


>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
           protein C47E8.8 protein.
          Length = 1675

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 184 LGDLDKHIWSDSSLTVSRYDTTGSDFLIGMQAWSSSRSLRQ 62
           +G+L + + S SS   SR+D T  D    + A SS+ + R+
Sbjct: 624 MGELQRPVTSQSSRKSSRWDVTEEDLKRKLSATSSTHNPRE 664


>AF003130-8|AAB54130.2|  611|Caenorhabditis elegans Pip kinase
           protein 1 protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 123 VSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGK 257
           V  R +  +    M   K   K  RLF +++P  E +PE+ ++ +
Sbjct: 557 VPLRRSYRDAGQAMSADKKEKKVERLFAQSKPTDEKVPEEQEEAE 601


>Z81074-8|CAB03043.1|  413|Caenorhabditis elegans Hypothetical
           protein F32B6.9 protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 66  LKDLEEDHACIPIKKSDPVVSY 131
           +KDLE  H C+ +KK    +S+
Sbjct: 392 IKDLESHHGCVSLKKDKKHISW 413


>U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein1 protein.
          Length = 551

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 57  EICLKDLEE-DHACIPIKKSDPVVSYRETVSEESDQMCLSK 176
           E C    E  DH C P  K  P +++    S+E+ +MC+S+
Sbjct: 355 EACSGSFESCDHDC-PNSKCHPKLAFTCPASKEARKMCISR 394


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
           protein 3 protein.
          Length = 3343

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = +1

Query: 7   GKSLANTLSPVPASCILRSVSRISRRTMLAFQLRNLTPLCRIVK 138
           GK++ +    +P + + R+ ++ S  T++   L   +P+C+I +
Sbjct: 594 GKTITSDFVTLPVTLVNRNTTQTSIITLIVKPLNQHSPICQITE 637


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,705,609
Number of Sequences: 27780
Number of extensions: 173383
Number of successful extensions: 601
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)