Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G13
(417 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 192 1e-49
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 128 1e-30
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 128 1e-30
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 123 4e-29
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 58 2e-09
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 43 7e-05
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 43 7e-05
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 36 0.011
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 31 0.31
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 29 1.3
At5g38500.1 68418.m04654 hypothetical protein contains Pfam prof... 29 1.7
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 28 2.2
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa... 28 2.9
At4g32670.1 68417.m04651 expressed protein ; expression supporte... 28 2.9
At3g42790.1 68416.m04474 PHD finger family protein contains PHD-... 27 3.8
At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger) fa... 27 3.8
At5g17300.1 68418.m02026 myb family transcription factor similar... 27 5.1
At3g58110.1 68416.m06480 expressed protein 27 5.1
At2g02470.1 68415.m00186 PHD finger family protein contains Pfam... 27 5.1
At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger) fa... 27 6.7
At5g19170.1 68418.m02283 expressed protein predicted proteins, A... 26 8.9
At3g54400.1 68416.m06015 aspartyl protease family protein contai... 26 8.9
At3g11200.1 68416.m01360 PHD finger family protein contains Pfam... 26 8.9
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 192 bits (467), Expect = 1e-49
Identities = 90/139 (64%), Positives = 111/139 (79%), Gaps = 1/139 (0%)
Frame = +3
Query: 3 TREESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVSYRETVSEESDQMCLSKS 179
T EESGEHIVAGAGELHLEICLKDL++D I KSDPVVS+RETV + S + +SKS
Sbjct: 521 TMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVCDRSTRTVMSKS 580
Query: 180 PNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPE 359
PNKHNRL+M+A+PM EGL E IDDG++ PRDD K R++ L++++ +D A+KIW FGPE
Sbjct: 581 PNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWAFGPE 640
Query: 360 GTGPNILVDCSKGVQYLNE 416
TGPN++VD KGVQYLNE
Sbjct: 641 TTGPNMVVDMCKGVQYLNE 659
>At1g06220.2 68414.m00656 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 128 bits (310), Expect = 1e-30
Identities = 59/126 (46%), Positives = 85/126 (67%)
Frame = +3
Query: 9 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNK 188
EESGEH + G GEL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK
Sbjct: 636 EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNK 695
Query: 189 HNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTG 368
N++ M A+P+ GL EDI++G V+ + K + KY++DL AR IW FGP+ G
Sbjct: 696 KNKITMIAEPLDRGLAEDIENGVVSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQG 755
Query: 369 PNILVD 386
PNIL+D
Sbjct: 756 PNILLD 761
>At1g06220.1 68414.m00655 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 128 bits (310), Expect = 1e-30
Identities = 59/126 (46%), Positives = 85/126 (67%)
Frame = +3
Query: 9 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNK 188
EESGEH + G GEL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK
Sbjct: 636 EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNK 695
Query: 189 HNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTG 368
N++ M A+P+ GL EDI++G V+ + K + KY++DL AR IW FGP+ G
Sbjct: 696 KNKITMIAEPLDRGLAEDIENGVVSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQG 755
Query: 369 PNILVD 386
PNIL+D
Sbjct: 756 PNILLD 761
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 123 bits (297), Expect = 4e-29
Identities = 58/126 (46%), Positives = 83/126 (65%)
Frame = +3
Query: 9 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNK 188
EESGEH + G GEL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK
Sbjct: 622 EESGEHTILGTGELYLDSIIKDLRELYSEVQVKVADPVVSFCETVVESSSMKCFAETPNK 681
Query: 189 HNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTG 368
N+L M A+P+ GL EDI++G V+ + + KY++DL AR IW FGP+ G
Sbjct: 682 KNKLTMIAEPLDRGLAEDIENGVVSIDWNRVQLGDFFRTKYDWDLLAARSIWAFGPDKQG 741
Query: 369 PNILVD 386
NIL+D
Sbjct: 742 TNILLD 747
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 58.0 bits (134), Expect = 2e-09
Identities = 24/49 (48%), Positives = 36/49 (73%)
Frame = +3
Query: 18 GEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQM 164
GEH++A AGE+HLE C+KDL+E A + ++ S P+VSYRET+ + +
Sbjct: 576 GEHVLAAAGEVHLERCVKDLKERFAKVNLEVSPPLVSYRETIEGDGSNL 624
Score = 26.6 bits (56), Expect = 6.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 333 RKIWCFGPEGTGPNIL 380
++IW GP GPNIL
Sbjct: 735 KRIWALGPREKGPNIL 750
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 43.2 bits (97), Expect = 7e-05
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Frame = +3
Query: 12 ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPN-- 185
ESG+ I++G GELHL+I ++ + ++ + P V++RET+++ ++ L K +
Sbjct: 499 ESGQTIISGMGELHLDIYVERMRREYK-VDATVGKPRVNFRETITQRAEFDYLHKKQSGG 557
Query: 186 --KHNRLFMKAQPMPEGLPEDID 248
++ R+ +P+P G E +
Sbjct: 558 AGQYGRVTGYVEPLPPGSKEKFE 580
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 43.2 bits (97), Expect = 7e-05
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Frame = +3
Query: 12 ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPN-- 185
ESG+ I++G GELHL+I ++ + ++ + P V++RET+++ ++ L K +
Sbjct: 499 ESGQTIISGMGELHLDIYVERMRREYK-VDATVGKPRVNFRETITQRAEFDYLHKKQSGG 557
Query: 186 --KHNRLFMKAQPMPEGLPEDID 248
++ R+ +P+P G E +
Sbjct: 558 AGQYGRVTGYVEPLPPGSKEKFE 580
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 35.9 bits (79), Expect = 0.011
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +3
Query: 9 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE 149
EE + ++ G GELHLEI + L+ + + P V+YRE++S+
Sbjct: 530 EEMNQTVIEGMGELHLEIIVDRLKREFK-VEANVGAPQVNYRESISK 575
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 31.1 bits (67), Expect = 0.31
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 130 YDTTGSDFLIGMQAWSSSRSLRQISRCNSPAPATMCSPDSSL 5
+ T GSD S + L+ +SRCN P P + + D S+
Sbjct: 261 FATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNHDGSI 302
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 150 ESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDI 245
E + +CL PN+H + + A+ +P LPE +
Sbjct: 44 EKENLCLYGHPNEHWEVNLPAEEVPPELPEPV 75
>At5g38500.1 68418.m04654 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 411
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 78 EEDHACIPIKKSDPVVSYRETVSEESD--QMCLSKSPNKHNRLFMKAQPMPEGL 233
EE + +K + S ++TVSEE D + LS P K +K Q P G+
Sbjct: 25 EEQRRRLLAEKREDSKSQKKTVSEEDDSEKRFLSHVPRKKRSSLVKRQQKPNGV 78
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 28.3 bits (60), Expect = 2.2
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -3
Query: 178 DLDKHIWSDSSLTVSRYDTTGSDFLIGMQAWSSSRSLRQISRCNSPAPAT--MCSPDSSL 5
DLD+++ SDS T GS + + WS S S + S P P + SP SS+
Sbjct: 228 DLDRYV-SDSMFVGFSGSTQGSTEIHSVDWWSFSSSFEESSESPPPMPNSPPPSSPSSSI 286
>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 161
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 36 GAGELHLEICLKDLEEDHACIPIKK 110
G E+ ICL++LE+ H I IKK
Sbjct: 111 GFDEIGCSICLEELEDGHEIIRIKK 135
>At4g32670.1 68417.m04651 expressed protein ; expression supported
by MPSS
Length = 808
Score = 27.9 bits (59), Expect = 2.9
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 191 VLVGRFG*AHLVRLFTDRFTIRHNGVRFLNWNASMVLLEILETDLK 54
+LVGR H + F F ++H+G+ FLN + + LL I+ LK
Sbjct: 535 ILVGR-AFFHSISFFMLSFGLKHDGLYFLNLASHVFLLCIMLLILK 579
>At3g42790.1 68416.m04474 PHD finger family protein contains
PHD-finger domain, INTERPRO:IPR001965
Length = 250
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +3
Query: 54 LEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPEGL 233
+E KD + I + V + + E + +CL PN+ + + A+ +P L
Sbjct: 13 VEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPEL 72
Query: 234 PE 239
PE
Sbjct: 73 PE 74
>At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 132
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 6 REESGEHIVAGAGELHLEICLKDLEEDH 89
+EE G G G+ ICL++ E+DH
Sbjct: 64 KEEEGGREEEGGGKRFCPICLEEYEDDH 91
>At5g17300.1 68418.m02026 myb family transcription factor similar to
CCA1 [Arabidopsis thaliana] GI:4090569; contains Pfam
profile PF00249: Myb-like DNA-binding domain
Length = 387
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 154 DSSLTVSRYDTTGSDFLIGMQAWSSSRSLRQISRCNSPAPAT 29
D+ S T GS+ L + + S +RSL +S + PA T
Sbjct: 154 DTQSPTSVLSTVGSEALCSLDSSSPNRSLSPVSSASPPAALT 195
>At3g58110.1 68416.m06480 expressed protein
Length = 784
Score = 27.1 bits (57), Expect = 5.1
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 57 EICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMP-EGL 233
E CL+ EED +K D V +E E + L+ + + + P EG
Sbjct: 339 EDCLEVKEEDVGAADSRKDDGAVDLKEDKYVEEHMLELNLGQETVSEMVSGEERGPVEGQ 398
Query: 234 PEDIDDGK 257
P D+++ K
Sbjct: 399 PMDVEENK 406
>At2g02470.1 68415.m00186 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 256
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 111 SDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPE 239
++ +V + +T E + +CL PN+ + + + +P LPE
Sbjct: 31 TNDMVKFYQTCDPEKENLCLYGLPNETWEVNLPVEEVPPELPE 73
>At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger)
family protein (ATL6) contains Pfam profile: PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 398
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 36 GAGELHLEICLKDLEEDHACIPIKKSDPV 122
G GEL ICL + E+D + K D V
Sbjct: 122 GKGELECAICLNEFEDDETLRLLPKCDHV 150
>At5g19170.1 68418.m02283 expressed protein predicted proteins,
Arabidopsis thaliana contains Pfam profile PF03080:
Arabidopsis proteins of unknown function
Length = 391
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 15 SGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRE--TVSEESDQMC 167
SGE+ G G+ LK E +H +P++ Y E TV + S++ C
Sbjct: 303 SGEYADKGYGKAAYFCNLKVAENNHTLLPVQDFGVQADYPEYYTVKKSSNRNC 355
>At3g54400.1 68416.m06015 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 425
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 415 SFRYCTPLEQSTRMLGPVPSGPKHQ 341
+F YC P +S+ G + GPK+Q
Sbjct: 229 TFSYCLPNSKSSNFSGSLRLGPKNQ 253
>At3g11200.1 68416.m01360 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 246
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = +3
Query: 54 LEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPEGL 233
+E KD A + + V + E + +CL PN+ + + A+ +P L
Sbjct: 13 VEEIFKDYSARRAALLRALTKDVDDFYSQCDPEKENLCLYGHPNESWEVNLPAEEVPPEL 72
Query: 234 PE 239
PE
Sbjct: 73 PE 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,345,022
Number of Sequences: 28952
Number of extensions: 168795
Number of successful extensions: 662
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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