Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G12
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     29   0.43 
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    27   1.7  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    26   2.3  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   4.0  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   4.0  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   4.0  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   4.0  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   4.0  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    25   5.3  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   7.0  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         25   7.0  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   7.0  
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    24   9.3  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    24   9.3  

>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 28.7 bits (61), Expect = 0.43
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 46  KTSAMLKSPPQIDSHYSRAADAH--SHDHEQEQKE 144
           K S   + PPQID H S  AD +  S+   QE KE
Sbjct: 259 KNSGRPQKPPQIDPHSSSLADEYRESNKRLQESKE 293


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 112 HSHDHEQEQKEEPTQGPYEDDDGMVGDDPA 201
           H+H HE    ++P    +ED+  +V D PA
Sbjct: 92  HAHRHEPPVSDQPVGIVHEDESYVVIDKPA 121


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 43  LKTSAMLKSPPQIDSHYSRAADAHSH-DHEQEQKEEPTQGPYEDDD 177
           L  S  L S  + D   S+  D+ S  D E+E   EP    Y++DD
Sbjct: 83  LAFSKELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDEDD 128


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 167 KMTTVWWVMTLPL 205
           K T  WW MT PL
Sbjct: 305 KFTVAWWAMTFPL 317


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 167 KMTTVWWVMTLPL 205
           K T  WW MT PL
Sbjct: 305 KFTVAWWAMTFPL 317


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 167 KMTTVWWVMTLPL 205
           K T  WW MT PL
Sbjct: 305 KFTVAWWAMTFPL 317


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 64  KSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDGMVG 189
           KSP  +D H     +    D+E EQ  +     YE D+ + G
Sbjct: 6   KSPIDVDLHLDNEEERTFVDYEFEQGRKDKAPIYESDETVKG 47


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 167 KMTTVWWVMTLPL 205
           K T  WW MT PL
Sbjct: 305 KFTVAWWAMTFPL 317


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 336 SMVASVSLLPLIRYEVYQKYYFNVKASLLETYFKNF 443
           S +   S+  L++   +Q+Y  NV+ S +++YF+ +
Sbjct: 56  SFIIPTSVDILVKVAGFQRYIVNVEFSNVQSYFRYY 91


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 100  AADAHSHDHEQEQKEEPTQGPYEDD 174
            A+DA   D E+E+ EE ++   E+D
Sbjct: 952  ASDADPSDEEEEESEEYSEDASEED 976


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +2

Query: 47  KPARC*NLRLRSILITRAPPTLTRTTMNRSKKKNPLRVLMKMTTVWWVMTLPLIYL 214
           +P+   N  + ++L+T    T+   ++N    +NP R+L     +W++M    IY+
Sbjct: 312 QPSSSRNSWIFTLLLTFTQLTIFYLSLN-CLIENPYRMLRNTFPIWFIMQTLQIYI 366


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 127 EQEQKEEPTQGPYEDDDGMVGDD 195
           +++++E+P  G  EDDD +V  D
Sbjct: 201 DKDEEEKPWSGDEEDDDELVVKD 223


>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +1

Query: 28  LQSPHLKTSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDG 180
           L+    K     +S P +        DA      Q Q+E+  QGP  DDDG
Sbjct: 121 LEKEEGKEKTREESNPPVLVEDETIVDAEDGGAAQNQQEKQ-QGPIVDDDG 170


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
            Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 52   SAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDGMVGDDPAAY 207
            SAML S   + + YS +     +   Q ++ E     +ED    VGDD + +
Sbjct: 868  SAMLPSFSNLPNLYSSSYLEEWNVFAQYKRRESNATDFEDFRSQVGDDESKF 919


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,500,067
Number of Sequences: 5004
Number of extensions: 24026
Number of successful extensions: 84
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)