BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_G12 (448 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.19 SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1) 32 0.19 SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8) 31 0.33 SB_7914| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0 SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 29 2.3 SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 29 2.3 SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) 29 2.3 SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 27 5.3 SB_56273| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 27 7.1 SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 27 9.3 >SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1283 Score = 32.3 bits (70), Expect = 0.19 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 79 IDSHYSRAADAHSHDH-EQEQKEEPTQGPYEDDDGMVGDDPAAYLSNE 219 IDSH A D H HDH ++ E P + P++ D + D P + + Sbjct: 919 IDSHMVHA-DRHLHDHPDRHLHEHPDRHPHDHPDRLTHDRPGLIMGQD 965 >SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1) Length = 682 Score = 32.3 bits (70), Expect = 0.19 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 79 IDSHYSRAADAHSHDH-EQEQKEEPTQGPYEDDDGMVGDDPAAYLSNE 219 IDSH A D H HDH ++ E P + P++ D + D P + + Sbjct: 52 IDSHMVHA-DRHLHDHPDRHLHEHPDRHPHDHPDRLTHDRPGLIMGQD 98 >SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8) Length = 362 Score = 31.5 bits (68), Expect = 0.33 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = +1 Query: 19 LDGLQSPHLKTSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPT-----QGPYEDDDGM 183 L+ + L+ + ++ P ID H + D + D E EQ EEP G + +D M Sbjct: 46 LEAQDTEELEAPELQEATPDIDEHVAPEVDDAALDDEDEQVEEPASDTDESGKTDLNDPM 105 Query: 184 VGDDPA 201 + D A Sbjct: 106 IDDQDA 111 >SB_7914| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 233 Score = 29.9 bits (64), Expect = 1.0 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +1 Query: 49 TSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDD 177 T + PPQ SH S D S + ++ EE T+ +DDD Sbjct: 90 TDTVTTRPPQSSSH-SETDDDDSGEESGDEDEEKTESESDDDD 131 >SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) Length = 1338 Score = 28.7 bits (61), Expect = 2.3 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +1 Query: 70 PPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDD 174 PP H A + +E+ Q E+P Q P ED+ Sbjct: 225 PPSASHHIKMAYKKYLQPYEEHQLEKPNQEPDEDN 259 >SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) Length = 884 Score = 28.7 bits (61), Expect = 2.3 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +1 Query: 94 SRAADAHSHDHEQEQKEEPTQGPYEDDDG 180 SRAAD S + E +EE EDDDG Sbjct: 250 SRAADNDSDNDEDSSEEEEDDDDDEDDDG 278 >SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) Length = 2822 Score = 28.7 bits (61), Expect = 2.3 Identities = 12/37 (32%), Positives = 25/37 (67%) Frame = +1 Query: 94 SRAADAHSHDHEQEQKEEPTQGPYEDDDGMVGDDPAA 204 ++ +++ + +QE KEEPT+ P ++++ +VGD A Sbjct: 504 AQPSESQETEEQQECKEEPTEEPQKEEE-IVGDPEMA 539 >SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) Length = 3891 Score = 27.5 bits (58), Expect = 5.3 Identities = 13/63 (20%), Positives = 25/63 (39%) Frame = -1 Query: 370 INGRSETDATIESDFNRREVPACRWRGRNVLWRPARRWTXXXXXXXXXXXXX*IDKRQGH 191 +NG +T + ++S+ ++ E W G+N+ W R + K + Sbjct: 1576 LNGSKKT-SVVDSELSKPEGIVFDWIGKNIYWTDGVRHVLASHDLTGRTLCSLLHKTSAN 1634 Query: 190 HPP 182 H P Sbjct: 1635 HVP 1637 >SB_56273| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 582 Score = 27.1 bits (57), Expect = 7.1 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +1 Query: 106 DAHSHDHEQEQKEEPTQGPYEDDDGMVGDDPAAY 207 D D + ++ +G Y+DDDG DD Y Sbjct: 69 DDDDGDDDGSDDDDDDRGDYDDDDGNSDDDDGNY 102 >SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1940 Score = 27.1 bits (57), Expect = 7.1 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Frame = +1 Query: 28 LQSPHLK---TSAMLKSPP-QIDSHYSRAADAHSHDHEQEQKE 144 L SP K TS + PP Q+ + AH HDH +E ++ Sbjct: 6 LLSPSCKEVVTSPLKLDPPYQVSCSINNTKTAHQHDHNKEPRQ 48 >SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) Length = 1188 Score = 27.1 bits (57), Expect = 7.1 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +1 Query: 124 HEQEQKEEPTQGPYEDDDGMVGDDPAAY 207 ++Q+Q ++ TQGP+ G DP A+ Sbjct: 1063 YQQKQAQKETQGPFSSRPQGAGHDPRAW 1090 >SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) Length = 428 Score = 26.6 bits (56), Expect = 9.3 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +1 Query: 82 DSHYSRAADAHSHDHEQEQKEEPTQGPYEDDD 177 D R + +HS HE E++ P+ G +E +D Sbjct: 218 DDATPRRSRSHSLRHEDEEERSPSGGRHERED 249 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,698,651 Number of Sequences: 59808 Number of extensions: 201251 Number of successful extensions: 763 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 680 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 755 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 883875528 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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