Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G12
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.19 
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)                  32   0.19 
SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8)           31   0.33 
SB_7914| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.0  
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    29   2.3  
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 29   2.3  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             29   2.3  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                27   5.3  
SB_56273| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                27   7.1  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   27   9.3  

>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 79   IDSHYSRAADAHSHDH-EQEQKEEPTQGPYEDDDGMVGDDPAAYLSNE 219
            IDSH   A D H HDH ++   E P + P++  D +  D P   +  +
Sbjct: 919  IDSHMVHA-DRHLHDHPDRHLHEHPDRHPHDHPDRLTHDRPGLIMGQD 965


>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
          Length = 682

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 79  IDSHYSRAADAHSHDH-EQEQKEEPTQGPYEDDDGMVGDDPAAYLSNE 219
           IDSH   A D H HDH ++   E P + P++  D +  D P   +  +
Sbjct: 52  IDSHMVHA-DRHLHDHPDRHLHEHPDRHPHDHPDRLTHDRPGLIMGQD 98


>SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8)
          Length = 362

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +1

Query: 19  LDGLQSPHLKTSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPT-----QGPYEDDDGM 183
           L+   +  L+   + ++ P ID H +   D  + D E EQ EEP       G  + +D M
Sbjct: 46  LEAQDTEELEAPELQEATPDIDEHVAPEVDDAALDDEDEQVEEPASDTDESGKTDLNDPM 105

Query: 184 VGDDPA 201
           + D  A
Sbjct: 106 IDDQDA 111


>SB_7914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 49  TSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDD 177
           T  +   PPQ  SH S   D  S +   ++ EE T+   +DDD
Sbjct: 90  TDTVTTRPPQSSSH-SETDDDDSGEESGDEDEEKTESESDDDD 131


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 70  PPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDD 174
           PP    H   A   +   +E+ Q E+P Q P ED+
Sbjct: 225 PPSASHHIKMAYKKYLQPYEEHQLEKPNQEPDEDN 259


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 94  SRAADAHSHDHEQEQKEEPTQGPYEDDDG 180
           SRAAD  S + E   +EE      EDDDG
Sbjct: 250 SRAADNDSDNDEDSSEEEEDDDDDEDDDG 278


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = +1

Query: 94  SRAADAHSHDHEQEQKEEPTQGPYEDDDGMVGDDPAA 204
           ++ +++   + +QE KEEPT+ P ++++ +VGD   A
Sbjct: 504 AQPSESQETEEQQECKEEPTEEPQKEEE-IVGDPEMA 539


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/63 (20%), Positives = 25/63 (39%)
 Frame = -1

Query: 370  INGRSETDATIESDFNRREVPACRWRGRNVLWRPARRWTXXXXXXXXXXXXX*IDKRQGH 191
            +NG  +T + ++S+ ++ E     W G+N+ W    R                + K   +
Sbjct: 1576 LNGSKKT-SVVDSELSKPEGIVFDWIGKNIYWTDGVRHVLASHDLTGRTLCSLLHKTSAN 1634

Query: 190  HPP 182
            H P
Sbjct: 1635 HVP 1637


>SB_56273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 106 DAHSHDHEQEQKEEPTQGPYEDDDGMVGDDPAAY 207
           D    D +    ++  +G Y+DDDG   DD   Y
Sbjct: 69  DDDDGDDDGSDDDDDDRGDYDDDDGNSDDDDGNY 102


>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1940

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +1

Query: 28  LQSPHLK---TSAMLKSPP-QIDSHYSRAADAHSHDHEQEQKE 144
           L SP  K   TS +   PP Q+    +    AH HDH +E ++
Sbjct: 6   LLSPSCKEVVTSPLKLDPPYQVSCSINNTKTAHQHDHNKEPRQ 48


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 124  HEQEQKEEPTQGPYEDDDGMVGDDPAAY 207
            ++Q+Q ++ TQGP+       G DP A+
Sbjct: 1063 YQQKQAQKETQGPFSSRPQGAGHDPRAW 1090


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 82  DSHYSRAADAHSHDHEQEQKEEPTQGPYEDDD 177
           D    R + +HS  HE E++  P+ G +E +D
Sbjct: 218 DDATPRRSRSHSLRHEDEEERSPSGGRHERED 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,698,651
Number of Sequences: 59808
Number of extensions: 201251
Number of successful extensions: 763
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)