Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G12
(448 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77920.1 68414.m09080 bZIP family transcription factor contai... 42 1e-04
At4g02810.1 68417.m00381 expressed protein 30 0.82
At2g32010.1 68415.m03911 endonuclease/exonuclease/phosphatase fa... 30 0.82
At1g03350.1 68414.m00314 BSD domain-containing protein contains ... 30 0.82
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 29 1.9
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family... 29 1.9
At1g55080.1 68414.m06291 expressed protein 29 1.9
At4g37270.1 68417.m05275 cadmium/zinc-transporting ATPase, putat... 28 2.5
At3g17170.1 68416.m02190 ribosomal protein S6 family protein (RF... 28 2.5
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 28 3.3
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 28 3.3
At4g27310.1 68417.m03918 zinc finger (B-box type) family protein... 27 5.8
At3g01260.1 68416.m00032 aldose 1-epimerase family protein simil... 27 5.8
At1g22610.1 68414.m02823 C2 domain-containing protein contains I... 27 5.8
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 27 7.6
At3g25100.1 68416.m03135 cell division control protein-related c... 27 7.6
>At1g77920.1 68414.m09080 bZIP family transcription factor contains
Pfam profile: PF00170 bZIP transcription factor
Length = 368
Score = 42.3 bits (95), Expect = 1e-04
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 34 SPHLKTSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDGMVGD 192
SP+ TS++++ P+ID H + + H Q + E+P+ +DDDG + D
Sbjct: 40 SPNTATSSIIQVDPRIDDHNNNIKINYDSSHNQIEAEQPSSNDNQDDDGRIHD 92
>At4g02810.1 68417.m00381 expressed protein
Length = 271
Score = 29.9 bits (64), Expect = 0.82
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 76 QIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDGMVGDD 195
Q D+ + + E+E++EE + ED++G+VG++
Sbjct: 190 QYDAEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEGIVGNN 229
>At2g32010.1 68415.m03911 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 594
Score = 29.9 bits (64), Expect = 0.82
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 85 SHYSRAADAHSHDHEQEQKEEPTQGPYEDDDGMVGDDPAAYLSN 216
S YSR +D +S + + ++ DDD GD P+ +L++
Sbjct: 260 SDYSRPSDYYSRPSNYSRPSDVSRWGSSDDDNGPGDSPSTFLNS 303
>At1g03350.1 68414.m00314 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 470
Score = 29.9 bits (64), Expect = 0.82
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 70 PPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDG 180
PP+ +S + HS +HE ++E P Q DD G
Sbjct: 14 PPETESESD--SPKHSEEHEHPEQEHPEQSESNDDGG 48
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 31 QSPHLKTSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPY 165
Q+PH+ +++ + H+S +H + + ++ E TQGPY
Sbjct: 469 QNPHVSSNSGYNLGVRDLEHFSHMMISHRREGDTYRQSEVTQGPY 513
>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
protein
Length = 477
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +1
Query: 37 PHLKTSAMLKSP-PQIDSHYSRAADAHSHDHEQEQKEEPTQGP 162
PH ++ SP PQ ++H H H H E EP+ P
Sbjct: 313 PHSPATSSTPSPSPQPETHQYPHHHPHHHHHHHELAPEPSLSP 355
>At1g55080.1 68414.m06291 expressed protein
Length = 244
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 28 LQSPHLKTSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYE 168
LQSP L+ ++ PPQ ++ + H+ +Q+ + P Q P +
Sbjct: 100 LQSPPLQPQSLQSPPPQQTMVHTPQSMMHTPQQQQQLVQTPVQTPQQ 146
>At4g37270.1 68417.m05275 cadmium/zinc-transporting ATPase, putative
(HMA1) contains InterPro accession IPR001757: ATPase,
E1-E2 type; identical to Potential
cadmium/zinc-transporting ATPase HMA1 (EC 3.6.3.3) (EC
3.6.3.5) (Swiss-Prot:Q9M3H5) [Arabidopsis thaliana];
identical to cDNA putative transcription factor (MYB73)
mRNA, partial cds GI:3941503
Length = 819
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 28 LQSPHLKTSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEE 147
L+ L+ SA L PP+ S RA + H HDH + +++
Sbjct: 41 LRQKPLRISASLNLPPR--SIRLRAVEDHHHDHHHDDEQD 78
>At3g17170.1 68416.m02190 ribosomal protein S6 family protein (RFC3)
annotation temporarily based on supporting cDNA
gi|15620809|dbj|AB057424.1|; contains TIGRfam TIGR00166
and Pfam PF01250 profiles ribosomal protein S6.
Length = 314
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 70 PPQIDSHYSRAADAHSHDHEQEQ-KEEPTQGPYEDDD 177
PP + H RA D + D E+E+ +E+ +G ED++
Sbjct: 220 PPPPEFHSVRAGDEYYDDDEEEEIEEDEDEGEGEDEE 256
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 27.9 bits (59), Expect = 3.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 79 IDSHYSRAADAHSHDHEQEQKEEPTQ 156
+D++Y H+H+H+Q+ + PTQ
Sbjct: 1 MDNNYQNYHHHHNHNHQQQWRPAPTQ 26
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 27.9 bits (59), Expect = 3.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 79 IDSHYSRAADAHSHDHEQEQKEEPTQ 156
+D++Y H+H+H+Q+ + PTQ
Sbjct: 1 MDNNYQNYHHHHNHNHQQQWRPAPTQ 26
>At4g27310.1 68417.m03918 zinc finger (B-box type) family protein
zinc-finger protein S3574, Oryza sativa, PIR3:JE0113
Length = 223
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 106 DAHSHDHEQEQKEEPTQGPYED-DDGMVGDDPAA 204
DA S+D ++E+ E+ ED DD GDD A
Sbjct: 116 DAESYDDDEEEDEDEEYSDDEDEDDDEDGDDEEA 149
>At3g01260.1 68416.m00032 aldose 1-epimerase family protein similar
to non-cell-autonomous protein pathway2, plasmodesmal
receptor [Nicotiana tabacum] GI:15824567; contains Pfam
profile PF01263: Aldose 1-epimerase
Length = 378
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = +1
Query: 46 KTSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDD 177
K++ + K + H A+ + HD + +++ G ++DDD
Sbjct: 13 KSTDLKKFKGGVTDHSISKANDNDHDDDDHDQDDDNDGDHDDDD 56
>At1g22610.1 68414.m02823 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1029
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 64 KSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGP 162
+ PP +D+ S+A +AH + ++E PT P
Sbjct: 894 RHPPHMDARVSQADNAHPDELDEEFDTFPTSRP 926
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 31 QSPHLKTSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDD 177
QS H + PP+ D+ +S + HD E+ T+ E DD
Sbjct: 585 QSVHGSDEEVEDDPPEPDTDFSDDDNKRDHDEVGSVDEQSTKSDEEYDD 633
>At3g25100.1 68416.m03135 cell division control protein-related
contains weak similarity to cell division control
protein 45 homolog (Suppressor of nda4 protein)
(Swiss-Prot:O74113) [Schizosaccharomyces pombe]
Length = 596
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 82 DSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDG 180
+S R DA E+E+ EE + +DDDG
Sbjct: 158 ESFQLRVEDAGEESDEEEEDEEEDEEDDDDDDG 190
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,104,854
Number of Sequences: 28952
Number of extensions: 132914
Number of successful extensions: 524
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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