Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G11
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    29   0.26 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   2.4  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   3.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   4.2  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   5.6  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    25   5.6  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.6  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    24   9.7  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.7  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    24   9.7  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    24   9.7  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    24   9.7  

>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = +1

Query: 7   RKHSNMRYLVILVLAAVWMVEGNPMILPDNDYFDLGIHDQVLGVFPNLLTDYMKFERSVR 186
           +K+SN+ +  I V      +  N  ILPD+ Y  + +H      +P   T   + ERS  
Sbjct: 678 QKYSNVSFEKIDVAERTCTISLNAPILPDDGYAYIRLHVYFPNNYPISATPVFQLERSSA 737

Query: 187 SVGETLHHILHGNDNKHEQDDNSSK 261
              E  +++ +   +  +Q  +S K
Sbjct: 738 FNDEQFNYVFNTLTSISDQCISSHK 762


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 157 QLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTPELPDTSCWSV 11
           Q  D+ERL     EYR++  R Q    D+    +R   P + D + W+V
Sbjct: 200 QSVDAERL---AEEYREKYGRSQTVVGDTSNVPQRLLLPSVNDPNIWAV 245


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 214 EYGGAFHPRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESS 77
           E    F P F L ++ + + L+D+  L   G     QNS   + SS
Sbjct: 275 ELPNPFVPFFDLDSKPNLSTLQDNASLTSQGSNLSSQNSGLSSSSS 320


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 111 EIKIVVIRQNHRIPFYHPNGSQHQNYQIPHVGV 13
           E+++ + RQN+ +  +HP  S   ++   H G+
Sbjct: 555 ELQLTMFRQNNMLTEFHPYSSNPSDWFTLHHGI 587


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 166 SCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPS 59
           S   + +  R R P  +Y +QN   ++E  +   PS
Sbjct: 164 SARSVSERTRKRSPVSDYEEQNESEKSEEEEGYSPS 199


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = -2

Query: 154 LEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTPELP 32
           +E     + P  +  +++   Q   + S +  K++P+PE+P
Sbjct: 210 IESDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPEVP 250


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 226 DNKHEQDDNSSKPKHPAAEIVRKGIEHGHKGLQKITSAV 342
           DN+H+Q   +   K   +E    GIEH  +  Q I  AV
Sbjct: 557 DNQHKQQWQAPSYKPLISEFFPMGIEHFIETAQSIVMAV 595


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 205 GAFH-PRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPS-KRQPTPELP 32
           G+F+ P  ++S  ++ +    +     P   Y D+N +  A+SS   LPS    P+   P
Sbjct: 114 GSFNLPNSNMSHSLNGDSTASNSSTLTPNRIYGDRNRQDYAQSSRYTLPSLPSSPSYNCP 173

Query: 31  DT 26
            T
Sbjct: 174 TT 175


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 121 DQVLGVFPNLLTDYMKFERSVRSVGETLHHILHGNDN 231
           + +L VF NL+ +   FE  V    + L  I   N+N
Sbjct: 72  EPILAVFINLIQESAAFEDHVSKFCQALEQIADQNNN 108


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 220 GNDNKHEQDDNSSKPKH 270
           G D + E+D+N SKP+H
Sbjct: 487 GIDAEKEKDENLSKPEH 503


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 221 VMTTSMNRTTIVRNPSILLQRSSERVSNTDTKGCRKLRAQSKHHWEY 361
           V+  + N+ TI   P++  Q+ +        +   K   +S HHWEY
Sbjct: 22  VLIDAFNKVTIDGKPNVQHQQPTYWYPPPPPRH-HKEHKKSHHHWEY 67


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 445  SSYIPKGCRKLVS*STYIGWRVGMLNVFIFPVV 347
            S ++PK           + W   ++NVFI P+V
Sbjct: 1319 SEFVPKITELSKEEDKLVAWATSIVNVFITPLV 1351


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 169 FERSVRSVGETLHHILHGNDNKHEQDDNSSKPK 267
           F+R    VG+T+ +I    ++  E+D  +S+ K
Sbjct: 571 FQRFGNFVGDTMRYITEEEESSEEEDLTTSRRK 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,293
Number of Sequences: 5004
Number of extensions: 42110
Number of successful extensions: 157
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)