Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G11
(458 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8) 29 1.8
SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_56923| Best HMM Match : PT (HMM E-Value=0.95) 28 4.3
SB_5457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_38362| Best HMM Match : BRCT (HMM E-Value=0) 27 5.6
SB_32958| Best HMM Match : Transformer (HMM E-Value=2.9) 27 7.5
SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_23501| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_2698| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=6.1) 27 7.5
SB_10127| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_7530| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 27 9.9
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 27 9.9
SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07) 27 9.9
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16) 27 9.9
>SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)
Length = 129
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 392 RMACRYAKRIYIPSGALTALVIFCSPLCPC 303
R ACRY +Y+P V+ +P+C C
Sbjct: 4 RFACRYVPNVYVPLCVQCGRVVM-NPICTC 32
>SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 772
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 226 DNKHEQDDNSSKPKHPAAEIVRKGIEHGHKGLQKITSAVKAPLGI 360
D+ ++ +S KP A ++ KG++H KGL +++ +K LG+
Sbjct: 301 DSVCQKIKSSIKPDVLAISLI-KGLDHRKKGLHLVSNQIKESLGL 344
>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1065
Score = 27.9 bits (59), Expect = 4.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 205 HHILHGNDNKHEQDDNSSKPKH 270
HH HGN KH + D +P++
Sbjct: 962 HHGRHGNSKKHRKHDEEDEPEN 983
>SB_56923| Best HMM Match : PT (HMM E-Value=0.95)
Length = 441
Score = 27.9 bits (59), Expect = 4.3
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = -3
Query: 84 NHRIPFYHPNGSQHQNYQIP 25
N++IP + P+GSQ Q++++P
Sbjct: 156 NNKIPSFFPDGSQPQDFKMP 175
>SB_5457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 91 DNDY-FDLGIHDQVL-GVFPNLLTDYMKFERSVRSVGETLHHILHG 222
D+DY F+LG HD+VL GV +T + + + S ++HG
Sbjct: 5 DHDYEFELGTHDKVLGGVELGPVTGFGELPERLGSAPNLNKRVIHG 50
>SB_38362| Best HMM Match : BRCT (HMM E-Value=0)
Length = 1572
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 357 SQWCFDCARNFLQPFVSVFDTLSDDLCSRM 268
+QW +DC RN S + TLS DL S +
Sbjct: 260 TQWFYDCIRNGFWVEESGYRTLSSDLNSSL 289
>SB_32958| Best HMM Match : Transformer (HMM E-Value=2.9)
Length = 253
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 112 RDQNSRYQAESSDSLLPSKRQPTPELPDTSCWSVSS 5
R + SR A + ++PS P PE S WS SS
Sbjct: 133 RGRASRRDARACAPMMPSAHTPVPE--SNSAWSASS 166
>SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 142 ERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTPELPDTSCWSVSS 5
E + PGH + NS + +++ SL+ + PE D + S+SS
Sbjct: 215 EEINDPGHGNKLDNSDFAQQANKSLIDKNVRAIPEFADVTS-SLSS 259
>SB_23501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 90 RQNHRIPFYH-PNGSQHQNYQIPHVGVFP 7
+Q+++ P Y P+G + NYQ P+ ++P
Sbjct: 424 QQSYQYPSYQQPSGGYNYNYQSPYSSLYP 452
>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 172 ERSVRSVGETLHHILHGNDNKHEQDDNSSKPKHPAAEIVRKGIE 303
E+S +++ +T H++LHG ++ + +K EI+ K IE
Sbjct: 772 EKSYQALRDTTHYLLHGLQYSNQAKEEQAKLIPKYHEIMIKTIE 815
>SB_2698| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=6.1)
Length = 94
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -2
Query: 217 GEYGGAFHPRFSLSAQISCNQLEDSERLRGPGH-EYRDQNS 98
G G P F L Q SC + + L GP + EY D N+
Sbjct: 49 GVCGLCLLPIFILLGQASCKRRREQRLLNGPEYREYSDNNN 89
>SB_10127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 214 LHGNDNKHEQDDNSSKPKHPAAEIVRKGIEHGHKGLQKITSA 339
L +N HE +SS P + E+ G+E KG K A
Sbjct: 85 LKRRENAHEGTSDSSLPSYSELEVHGSGVEKQKKGDPKYRKA 126
>SB_7530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 90 RQNHRIPFYH-PNGSQHQNYQIPHVGVFP 7
+Q+++ P Y P+G + NYQ P+ ++P
Sbjct: 114 QQSYQYPSYQQPSGGYNYNYQSPYSSLYP 142
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 26.6 bits (56), Expect = 9.9
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +1
Query: 181 VRSVGETLHHILHGNDNKHEQDDNSSKPKHPAAEIVRKGIEHGHKGLQKITSAVKAPLGI 360
V S T+ I+ GN E S P + VRK + GH +T +P
Sbjct: 1660 VESAIRTIASIVIGNQGVGENATTISSPGVTLSVQVRKNLTDGHLWFSVVTRPANSPFTR 1719
Query: 361 *IRLAYRHAI-RCT*IS*LIFC-SPLE 435
RL +I CT ++ L+F SP E
Sbjct: 1720 VQRLTCCLSILLCTMLANLMFYRSPSE 1746
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 97 RYQAESSDSLLPSKRQPTPELPD 29
R Q+ SS SLLP +P P L D
Sbjct: 3139 RAQSPSSSSLLPRSHEPVPILSD 3161
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 262 VSNYCRPVHACCHYHGEYG 206
V N+CR ACC +GE+G
Sbjct: 2409 VFNFCRLQIACCIAYGEFG 2427
>SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07)
Length = 1248
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 281 RSSERVSNTDTKGCRKLRAQSKHHWEYKYV*HTDTPSDVRRSAD 412
+SS R S + KGC K ++S+H E + + ++VR D
Sbjct: 757 KSSRRRSQKENKGCPKKESESEHTVEGRKYTLQNAKTEVRLDDD 800
>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 172 ERSVRSVGETLHHILHGNDNKHEQDDN 252
++ ++ +GE L+ I + ND+ + DDN
Sbjct: 38 DKRMKIIGEVLNGIKYNNDDDFDDDDN 64
>SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16)
Length = 458
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = +1
Query: 112 GIHDQVLGVFPNLLTDY---MKFERSVRSVGETLHHILHGNDNKHEQ 243
G+H L V L D + E R +TL ++HG D EQ
Sbjct: 179 GVHSHALDVMKERLEDAERKLAMELEARHNVQTLSSLIHGTDKASEQ 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,537,677
Number of Sequences: 59808
Number of extensions: 328856
Number of successful extensions: 1164
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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