Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G11
(458 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 32 0.21
At5g64220.1 68418.m08067 calmodulin-binding protein similar to a... 29 2.0
At2g22530.1 68415.m02672 phosphatidylinositolglycan-related simi... 28 2.6
At1g44770.1 68414.m05129 expressed protein 27 4.6
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 6.1
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 6.1
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 6.1
At5g48820.1 68418.m06040 kip-related protein 3 (KRP3) / cyclin-d... 27 8.1
At5g05490.2 68418.m00593 cohesion family protein SYN1, splice va... 27 8.1
At5g05490.1 68418.m00592 cohesion family protein SYN1, splice va... 27 8.1
At3g58650.1 68416.m06537 expressed protein 27 8.1
At2g34350.1 68415.m04204 nodulin-related weak similarity to nodu... 27 8.1
At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contai... 27 8.1
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 90 RQNHRIPFYHPNGSQHQNYQIPHV--GVFPRA 1
R+NHR P+ NGS HQ + I G FPR+
Sbjct: 453 RENHRFPYSAQNGSLHQLHHIGSAPSGFFPRS 484
>At5g64220.1 68418.m08067 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from[Nicotiana tabacum]
Length = 1050
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 291 KGYRTRTQRAAENYERSQSTTGNINTFSIPTR 386
KG R T EN+ S S TG++N S TR
Sbjct: 136 KGNRMSTSGTKENHSNSLSGTGSVNVDSTATR 167
>At2g22530.1 68415.m02672 phosphatidylinositolglycan-related similar
to Pig-o [Mus musculus] GI:8099973
Length = 897
Score = 28.3 bits (60), Expect = 2.6
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Frame = -3
Query: 348 CFDCARNFLQPFVSVFDTLSDDLC--SRMLGFRTIVV--LFMLVVITM--ENMVERFTHA 187
CF C FL F V+ D +C S +L + + L +++VI+M +MVE +
Sbjct: 484 CFICGTVFLSLFKEVYHEPKDRVCSLSNLLNLEEVFIFALLLILVISMGSSSMVEEEHYI 543
Query: 186 SH*ALK-FHVI 157
H + FH++
Sbjct: 544 WHFMVSTFHLL 554
>At1g44770.1 68414.m05129 expressed protein
Length = 271
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 196 ETLHHILHGNDNKHEQDDNSSKPKHPAAEIVRK 294
ET HH H D HE + S P+ E +R+
Sbjct: 25 ETYHHHHHHQDENHESTNPISDPRDRELEALRQ 57
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 395 HRMACRYAKRIYIPSGALTALVIF 324
H+M CRY ++ IP LT + +F
Sbjct: 385 HKMICRYHQKAPIPLNVLTTVPLF 408
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 395 HRMACRYAKRIYIPSGALTALVIF 324
H+M CRY ++ IP LT + +F
Sbjct: 408 HKMICRYHQKAPIPLNVLTTVPLF 431
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 395 HRMACRYAKRIYIPSGALTALVIF 324
H+M CRY ++ IP LT + +F
Sbjct: 385 HKMICRYHQKAPIPLNVLTTVPLF 408
>At5g48820.1 68418.m06040 kip-related protein 3 (KRP3) /
cyclin-dependent kinase inhibitor 3 (ICK3) identical to
cyclin-dependent kinase inhibitor 3 (krp3) [Arabidopsis
thaliana] GI:14422289
Length = 222
Score = 26.6 bits (56), Expect = 8.1
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = -2
Query: 295 PF*RSLQQDAWVSNYCRPVHACCHYHGEYGGAFHPRFSLSAQISCNQLEDSERLRGPGHE 116
P +S +D N+ +C GE F R S CN +ED E + PG
Sbjct: 102 PVAQSSNEDECFDNFVSVQVSC----GENSLGFESRHSTRESTPCNFVEDMEIMVTPGSS 157
Query: 115 YRD--QNSRYQAESSDSLLPS 59
R + ++ D+++P+
Sbjct: 158 TRSMCRATKEYTREQDNVIPT 178
>At5g05490.2 68418.m00593 cohesion family protein SYN1, splice
variant 1 (SYN1) identical to SYN1 splice variant 1
[Arabidopsis thaliana] GI:6453715
Length = 617
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 163 MKFERSVRSVGETLHHILHGNDNKHEQDDNSSKPKHPAAEIVR 291
++ E+S V E +H+ H + HE+ D SS+ AEI+R
Sbjct: 372 LRAEQSPGFVQERMHN--HHQTDHHERSDTSSQNLDSPAEILR 412
>At5g05490.1 68418.m00592 cohesion family protein SYN1, splice
variant 1 (SYN1) identical to SYN1 splice variant 1
[Arabidopsis thaliana] GI:6453715
Length = 627
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 163 MKFERSVRSVGETLHHILHGNDNKHEQDDNSSKPKHPAAEIVR 291
++ E+S V E +H+ H + HE+ D SS+ AEI+R
Sbjct: 382 LRAEQSPGFVQERMHN--HHQTDHHERSDTSSQNLDSPAEILR 422
>At3g58650.1 68416.m06537 expressed protein
Length = 723
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = -2
Query: 193 PRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSK 56
P F+ A++S NQ +DS + G++ + + E+ + + S+
Sbjct: 198 PSFAAQAKVSSNQKQDSLSMSSSGNKRMSSGQKEKVEAKNRAVKSQ 243
>At2g34350.1 68415.m04204 nodulin-related weak similarity to
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 525
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -3
Query: 324 LQPFVSVFDTLSDDLCSRMLGFRTI---VVLFMLVVITMENMV 205
L PFV +DT+ + G I +V +++VVI +EN++
Sbjct: 195 LMPFVRTYDTVIAGDKKHLNGLSAISLIIVTYLMVVILVENII 237
>At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contains
aminoacyl-transfer RNA synthetases class-II signature 1,
PROSITE:PS00179
Length = 766
Score = 26.6 bits (56), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 283 SLQQDAWVSNYCRPVHACCHYHGE 212
+L +D WV+ CR + C H+ E
Sbjct: 193 ALTRDTWVTVLCRKIRDCWHWVAE 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,640,905
Number of Sequences: 28952
Number of extensions: 220904
Number of successful extensions: 833
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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