Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G10
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    87   2e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    54   1e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    52   3e-08
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    42   6e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    35   0.006
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    34   0.013
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   0.83 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   7.8  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 38/40 (95%), Positives = 39/40 (97%)
 Frame = +1

Query: 10  KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
           KYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 21/41 (51%), Positives = 32/41 (78%), Gaps = 3/41 (7%)
 Frame = +1

Query: 13  YSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 126
           Y+ W+GGSIL+SL TF Q+WIS+QEY+E G    +++ ++C
Sbjct: 392 YASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 21/29 (72%), Positives = 24/29 (82%)
 Frame = +1

Query: 16  SVWIGGSILASLSTFQQMWISKQEYDESG 102
           +VW GGSILASL  FQ +W+SKQEYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 41.5 bits (93), Expect = 6e-05
 Identities = 17/39 (43%), Positives = 31/39 (79%)
 Frame = +1

Query: 13  YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
           ++ W+GGSILASLSTF+++ I+ +EY ++  +++ R+ F
Sbjct: 342 HNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 4   RGKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 120
           R + +VW GGS+LA    F     +K +Y+E G SI  R
Sbjct: 381 RQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 33.9 bits (74), Expect = 0.013
 Identities = 14/34 (41%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = +1

Query: 4   RGKYSVWIGGSILASL-STFQQMWISKQEYDESG 102
           R +++V+IGG++LA + +    MW+SK E++E G
Sbjct: 345 RRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 22  WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 123
           ++GGSI+A  S  + +   +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 49   LSTFQQMWISKQEYDESGPSIV 114
            L  + + W  KQ++DES  S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,815
Number of Sequences: 5004
Number of extensions: 23108
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)